Gene detail

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Gene detail information of Glyur000510s00021551.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32700.6	0	LEUNIG_homolog
NR	XP_004492306.1	0	PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum]
COG	YP_001864889.1	1.00E-36	hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	2.00E-173	Transcriptional corepressor LEUNIG
trEMBL	tr\|G7L191\|G7L191_MEDTR	0	Transcriptional corepressor leunig-like protein {ECO:0000313\|EMBL:AES79147.1}

Sequence

Transcript Sequence

>Glyur000510s00021551.1
ATTACCTTGTCTTACGTTTTTGTGTGGTGGGACTTGTGGGGTGGTGTTTTAAGCTTTGATCCAATGAACTGGGAATCAGAAGGTGGGGGGTTTAAAGTTGCCAATAATTGTGAAAAAAAGAGCACAAGTCTCTGGGAAATTGGGTTTGCAGATATGAAGCCCAATTCGGCTCAGATTCCGAGTAATTGGGAAGCTGATAAAATGCTTGACGTTTATATTCATGATTATTTTGTGAAAAGAAAATTACATAACGCTGCNAAAGCTTTTATGACAGAGGGCAAAGTTTCCACAGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCCGAGGCTGCTGCGGCTTACATTGAGACCCAACAAACAAAAGCCAGAGAACAACACCAAATGCAGCAATTGCAACTAATACAGCAGCGCAATGCACAGTTACAGCGAAGAGATCCTAATCATCCCGCTCTGGGTGGTTCCTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCCACCGGCAAGTGTGTTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTTAATGGATTCAGAGGCATCTCCAACTCATATTGATCCAAATAGGATGGCCCTTCTCAAGTCAGCAGCAAGTCATCAAGGCCAATTGGTTCATGGTAATTCAGGGAATATGTCCACTGCATTGCAGCAAATTCAGGCACGGACTTCTTTGACCACTGACATCAAAGGAGAAGTTAACTTAGGTGCCAATCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTGCAATCAAAATCTGGGCTAGGCAGTGCAGGACTAAATCAAGGAGTTACAAGTCTTCCATTGAAGGGCTGGCCTCTAACTGGAATTGATCAACTAAGACCTAGTTTGGGTGTACAAGTTCAGAAGCCTAATTTAACAACCCAAAACCAATTTCTTTTGGCATCACAACAACAGCAGGTGTTGGCACAAGCTCAGGCTCAGGCTCAAAACAACCTTGGAAATTCTAATTATGGTGATATGGATCCACGTAGACTTTCTGGTCTTCCACGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTACCAGGAATGATGGATCTATTTCCTCCCAAATGCAGTCAGGTTCACCTAAGATGAAGATGACCCAGTCACAACATTCATTATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCAACTGCAGCAGAATAACAGAAAAAGAAAACACCCTTCTTCTTCTGGAGCTGCCAACAGCACTGGTACTGGAAACACAGCTGGTCCTTCGCCTAATTCACCACCATCAACACACACACCTGGTGATGGATTAAATACAGCAAGCAGCATGCAGCATGCTAACAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGGAACAGGAGGCCTCGCATCATCTTCAAATTTGCTGGATGACATAGAACGATTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAGTCATTTCTATCAAATGATGGAGGAGATGGTGGGAATCTCTATGGATCAGTAAAACAAAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGTTTCACCTTTGCTGAATTCAGTTGCATAAGAACAAGGAACAGCACGGTTACTTGCTGTCACTTTTCTTCAGATGGAAAGTTGCTTGCCAGTGCTGGGGATGACAAGAAGGTTGTCCTCTGGAACATGGACACTTTAAAGACAGAGAGCACTCCTGAAGAACACAAATCAGTTATTTCAGATGCCCGTTTTAGACCAAATTCATCTCAGTTGGTGACAGCCTCATATGATAAATCTGTGCGCTTATGGGATGCAGCCAATCCAACCTATTGTGTGCAAGAATATAGCGGGCACAGTTCAGCTATTAAGTCCCTTGATTTCCACCCCAAGAAGACTGATATTTTCTGCTCCTGCGATAATGAAAATGAAATTCGGTATTGGAACATTACTTCATTTTCTTGCACCCGAGTATCCAAGGGAGGTAGTGCAAAAGTGAGGTTTCAGCCTAGACACGGACAATTACTGGCAGCAGCTTCTGATAAAGTAGTATCACTTTTTGATGTCGAAACTGACAGACAAATTTGCTCACTCCAGGGTCATCCTGAACCGGTGAACTACATTTGCTGGGATGCGGTTGGAGAAATCGTGGCGTCCGTGAGTCCAAATATGGTGAAGATTTGGAGTGTGGTCTCAGGAGAATGCATTCAGGAGCTCGGCTCCACCGGCAACCAGTTTTATTCCTGTGTCTTTCATCCAAGTTATTCAACTTTGTTAGTGATAGGAGGGTTTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTCCTGCACACGAGAATGTAATATCTGCTTTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCAAGTCATGACAACTCTGTGAAGTTGTGGAAATAAGTATCAGATTTTAGGTTCTAATATCTTCCCCCATATTCTTTAGTTACTCACCCTTTAATTTCTGAAAGAAATCAGAGATCNATGTCGAAAGCAAAAAGGGGTCTTTGAACTCGGTTTGCAATAAGGAATACTATACTACTAGCACACAAAAACAGTTTTGCATTATGTATAAAATCCCAAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00510	45320	54095	-

Gene family

Gene family	subfamily
Transcription Factors Family	LUG
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000510s00021551.1	PF08513.6	LisH	46	71	2.80E-06
Glyur000510s00021551.1	PF00400.27	WD40	538	567	3.10E-07
Glyur000510s00021551.1	PF00400.27	WD40	576	609	6.80E-07
Glyur000510s00021551.1	PF00400.27	WD40	616	653	0.00041
Glyur000510s00021551.1	PF00400.27	WD40	700	733	0.0029
Glyur000510s00021551.1	PF00400.27	WD40	783	816	4.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.050
SRR1783600	control	52.342
SRR1783602	moderate drought stress	89.994
SRR1811619	moderate drought stress	90.104

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	72.664
DRR006520	Root Summer glycyrrhizin high producing strain	71.303
DRR006521	Root Winter glycyrrhizin high producing strain	62.808
DRR006522	Root Winter glycyrrhizin high producing strain	60.945
DRR006523	Root Summer glycyrrhizin low producing strain	70.742
DRR006524	Root Summer glycyrrhizin low producing strain	70.595
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	38.393
SRR2868004	Drought Stress(Tissue:root)	47.350
SRR2967015	Control (Tissue:root)	52.507

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	31.423
SRR9715740	Leave	39.868
SRR9715741	Leave	41.129
SRR9715739	Root	6.000
SRR9715742	Root	36.141
SRR9715743	Root	27.864

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.410
SRR8749028	MeJA induced 9h	35.602
SRR8749029	MeJA induced 9h	27.395
SRR8749030	Uninduced	15.218
SRR8749031	Uninduced	7.125
SRR8749032	Uninduced	9.252

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	48.946
SRR8400027	Control-Root	45.830