Gene detail

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Gene detail information of Glyur000511s00022046.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15870.1	5.00E-178	glycosyl hydrolase family 81 protein
NR	XP_003555070.2	0	PREDICTED: endo-1,3(4)-beta-glucanase 1-like [Glycine max]
COG	YP_008154648.1	1.00E-88	hypothetical protein SCE1572_41440 [Sorangium cellulosum So0157-2]
trEMBL	tr\|K7MWG8\|K7MWG8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G05550.2}

Sequence

Transcript Sequence

>Glyur000511s00022046.1
ATGACATCATCTTCTTCTCTTCAAATGATTCCCTCACCAAGTTTACATTTAGGCTTAACAACAGCCAAGCATGGATCCTATATGCTTCCCCATCAATCAGGTTTGTTGTTGAGTCATGGTCGTTCTGAGATCACTACTTCTGAGGTGTTTTTCGGCACAATCAGGATATCTTTGTTGCCGGATTCCGATTCGAAACATGAGTCTGTTCTTGACAGGTTNAGTCTTTGNTACCCTGTNTCNGGTGATGCNGTGTTTAGAGANCCNTTTTGTGTGGAGTATAAGTGGGAGAAGAAAGAGTGGGGTGATTTGCTTATTTTGGCACACCCTCTTCATCTTCAGCTTTTGTCTGAGAGTGANTGTGATGTTACTGTTCTGAGGGATTTTAAGTATAAAAGCATTGATGGGGANCTTGTTGGTNTTGTTGGGGATTCATGGGTTCTGAAAACAGAACCTGTTTCTGTAACTTGGCACTCTACAAAGGGTGTGAAGGAAGAGTACCATGAAGAAATTCTTTCTGCACTTTTTAAGGATGTTGAGGGTTTGAACTCATCAACAATAACAACAACATCGTCTNATTTTTATGGGAAATTGATTGCAAGGGCAGCAAGGCTGGTTTTGATAGCTGAAGAAGTTTTTTTCTTTGATGTGATTCCAAAGGTTAAGATTAAGAAGTTTTTGAAGGAAACTATTGAACCATGGCTTGAAGGGACTTTTAATGGGAATGGNTTTCTATATGATAGGAAATGGGGAGGCATTGTTACCAAACAAGGGTCTACTGATACTGATGCTGATTTTGGGTTTGGAATTTATAATAATCACCATTATTACTTGGGATACTTCCTCTATGCAATTGCNGTGATGGCAAAGATTGACCCGGTTTGGGGTAGGAAGTATAAGCCTCAAGCCTATTCACTGATGGAAGATTTCATGAACTTGNGCACAAGATCAAACTCGAATTATACACGTCTGAGGTGTTTTGACCTTTACAAGTTGCATTCTTGGGCTGGAGGGTTAACTGAGTTCACTGATGGAAGGAATCAGGAGAGCACCAGTGAAGCTGTGAATGCATATTATTCTGCTGCCTTGATGGGTNTGGCATATGGTGATGCCAATCTTGTTGCCATTGGATCAACACTCACAGCATTGGAGATTCTTGGAGCTCAAACTTGGTGGCATATAAAAGAGGGAGGGAATCTGTATGAGGGAGATTTTGCAAAAGAGAATAGGATCATGGGAGTTCTTTGGGCTAACAAGAGAGAGAGTAGACTTTGGTTTGCATCTGCTGAGTGGAGAGAATGTAGGCTTGGAATTCAGCTCTTACCATTGCTTCCTATTTCTGAAGTTGTGTTCTCCAATGTTGATTATGTGAAGGAGCTTGTGGAATGGACTTTGCCCGCTTTGAAAAGGAATGGTGTTGCTGAANGATGGAAGGGGTTTGTGTATGCCTTGCAGGGAATTTATGATAAAGAANGTGCATTGGAGAAGATAAGAAAGTTAAATGGCTTTGATGATGGAAACTCATTGACTAATCTATTGTGGTGGGTTCACAGCAGAGATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00511	40506	42522	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH81

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016998 cell wall macromolecule catabolic process

molecular_function GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group GO:0052862 glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000511s00022046.1	PF03639.8	Glyco_hydro_81	38	518	3.60E-164

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.172
SRR1783600	control	0.204
SRR1783602	moderate drought stress	0.091
SRR1811619	moderate drought stress	0.048

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.277
DRR006520	Root Summer glycyrrhizin high producing strain	0.195
DRR006521	Root Winter glycyrrhizin high producing strain	0.214
DRR006522	Root Winter glycyrrhizin high producing strain	0.139
DRR006523	Root Summer glycyrrhizin low producing strain	1.042
DRR006524	Root Summer glycyrrhizin low producing strain	0.910
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.118

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.658
SRR2868004	Drought Stress(Tissue:root)	0.120
SRR2967015	Control (Tissue:root)	0.171

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.040
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.201
SRR9715743	Root	0.229

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.083
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.019
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.371
SRR8400027	Control-Root	0.588