Gene detail

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Gene detail information of Glyur000511s00022052.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51940.1	2.00E-78	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NR	XP_003530632.1	0	PREDICTED: lysM domain receptor-like kinase 3-like [Glycine max]
COG	YP_004696643.1	1.00E-18	serine/threonine protein kinase [Nitrosomonas sp. Is79A3]
Swissprot	tr\|F4IB81\|LYK3_ARATH	9.00E-89	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|I1KXB8\|I1KXB8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G39070.1}

Sequence

Transcript Sequence

>Glyur000511s00022052.1
ATGGTTTCTTCCACTCAGCTTTTTTCTTTTCTTTTCCCTTTGCTGGTGGCAACTTCATTTGNTAGAGTTTTAGCCTTGGAGGTTTCAATCAAAACATCATTTTTGTCTCCTTTAAATTGCTCTGCAAAGATCAGAACATGTAATGCCTCACTCTACCACATAAGCCATAATCTAACACTTGACNACATTGCCTCTTTTTACTCTGTCAATTCCTCTCAAATCAGTCCTATAATGTATGGCACNAAACAAGATTATCTCATAACAGTACCTTGTTCTTGCAAAGACACCAATGAACTTAGGGGTTATTTCTATGATACAACTTACACAGTGAGGCCAAATGACACTTTTGTGAATATCTCAAACCTGGTTTACAGTGGCCAAGCCTGGCCAACAGTTGATGGTATATTGGTTCCAAATCAGAACTTAACAATACATATTCCATGTGGGTGTTCAGAAAGTGACTCTCAGGTAGTTGTCACCTACACAGTCCAGCAGAATGATACACCAACAACCATTGCTAACCTGCTCCATGCTACACTGGCTAACTTGCTGANTATGAATGAAATTCTGGCTCAGAACCCCTCATTCATAGATGTTGGTTGGGTGCTATTTGTTCCCAGGGAATTGAAAGGGCTTCCACCTTCTAACAATGAAGNAAACAAACATAAGTGGACTACAATCATTGGCATCTTAGCAGGTGTGGCATTACTTTCAATTATTGCAGTGATTGTTGTTGTCATTTTCAGGAGAAATAAAGCCTATCAAATCAGCAAAAAAGATTCACACGTTGTCTCTAGAAGATCAATTGCCAGTAGAAATATTTCCTCAATGAACCTTACCCTTCATAAGGAATATATGGAAGATATAATGTCACTAGGATCAGAAAGACCAGTGGAATATAACCTTGAGGAGATTGAAGAGGCTACAAATAACTTTGATGAAACTAGAAGAATTGGAATTGGTGGATATGGGAGTGTGTTTTTTGGAATGTTAGGGAAGAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAATCCAAAGAGTTCTATGCAGAACTCAAGGTCTTGTGTAGAATCCATCATATCAATATTGTGGAGCTGTTGGGATATGCCAGTGGAGAAGATCACCTCTATTTGGTGTATAAGTATGTTTCAAATGGATCACTTAGTGATCATCTTCATGATCCATTACTGAAAGGCCACCAGCCTCTTTCTTGGAGTGCCAGGGTTCAGATTGCACTGGATGCTGCAAAAGGCCTTGAATATATACATGATTATACAAAAGCACAGTATGTGCACAGAGATATAAAGACTAGCAACATTCTTCTTGATGAGAAGCTCAGAGCAAAGGTAGGAGATTTTGGACTTGCAAAGCTGGTTGGCAGAACCAATGATGAAAACTTTATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAAGACAGCCAAGAAGTCCCCAAAATGAAATCACTCATCACTGTTGTTAATAAAATTTTCCAAGATGATGACCCCGAGACTGCTTTAGAAGATGTTATAGATAAGAATCTTGAAGCTAGCTATCCGATGGAAGATGCCTGCAAGATGGCNGCAGTAGCTGAGTGGTGCTTGCGAGAAGATCCAGTGGAGAGGCCTGAAATGAGGGATATAGTTAAGGTGTTGTCACAGATTGTGATGTCCTCGATAGAGTGGGAGGCATCACTAGGAGGAAACAGCGAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00511	85959	90199	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000511s00022052.1	PF01476.15	LysM	161	206	9.10E-05
Glyur000511s00022052.1	PF00069.20	Pkinase	314	554	7.40E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.124
SRR1783600	control	0.101
SRR1783602	moderate drought stress	0.022
SRR1811619	moderate drought stress	0.015

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.063
DRR006524	Root Summer glycyrrhizin low producing strain	0.009
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.053
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.009
SRR2967015	Control (Tissue:root)	0.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.037
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.012

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.005
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.124
SRR8400027	Control-Root	0.212