Gene detail information of Glyur000511s00022059.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 1.00E-12 | F-box family protein |
| NR | XP_003553895.1 | 7.17E-122 | PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] |
| Swissprot | tr|Q9LIR8|FBK67_ARATH | 8.00E-10 | F-box/kelch-repeat protein At3g23880 |
| trEMBL | tr|K7MX79|K7MX79_SOYBN | 3.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G23910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00511 | 147402 | 149258 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000511s00022059.1 | PF00646.28 | F-box | 5 | 41 | 2.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.045 |
| SRR1783600 | control | 0.060 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.327 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.303 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.214 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.571 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.717 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.267 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.443 |
| SRR2967015 | Control (Tissue:root) | 0.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.026 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.025 |
| SRR8400027 | Control-Root | 0.000 |