Gene detail information of Glyur000512s00017070.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53820.1 | 5.00E-44 | RING/U-box superfamily protein |
| NR | XP_003627467.1 | 2.38E-124 | RING-H2 finger protein ATL3C [Medicago truncatula] |
| Swissprot | tr|P0C035|ATL60_ARATH | 6.00E-64 | RING-H2 finger protein ATL60 |
| trEMBL | tr|G7L9W6|G7L9W6_MEDTR | 9.00E-125 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AET01943.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00512 | 9030 | 9980 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000512s00017070.1 | PF13639.1 | zf-RING_2 | 97 | 140 | 4.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.488 |
| SRR1783600 | control | 1.287 |
| SRR1783602 | moderate drought stress | 1.032 |
| SRR1811619 | moderate drought stress | 1.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.202 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.197 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.934 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.868 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.844 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.189 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.051 |
| SRR2967015 | Control (Tissue:root) | 5.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.368 |
| SRR9715740 | Leave | 9.176 |
| SRR9715741 | Leave | 37.759 |
| SRR9715739 | Root | 3.764 |
| SRR9715742 | Root | 5.576 |
| SRR9715743 | Root | 6.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.510 |
| SRR8749028 | MeJA induced 9h | 23.716 |
| SRR8749029 | MeJA induced 9h | 13.020 |
| SRR8749030 | Uninduced | 14.660 |
| SRR8749031 | Uninduced | 7.744 |
| SRR8749032 | Uninduced | 10.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.888 |
| SRR8400027 | Control-Root | 6.769 |