Gene detail information of Glyur000512s00017072.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17280.22.00E-69ubiquitin-conjugating enzyme 34
NRXP_004510574.18.42E-120PREDICTED: ubiquitin-conjugating enzyme E2 34-like isoform X1 [Cicer arietinum]
Swissprottr|Q9SHI7|UBC34_ARATH9.00E-96Ubiquitin-conjugating enzyme E2 34
trEMBLtr|B7FML7|B7FML7_MEDTR7.00E-118Uncharacterized protein {ECO:0000313|EMBL:AFK33358.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005121610820738-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04554UBE2J2, NCUBE2, UBC6 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Parkinson's diseasemap05012


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000512s00017072.1PF00179.21UQ_con531702.80E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.899
SRR1783600control26.252
SRR1783602moderate drought stress28.271
SRR1811619moderate drought stress27.878

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain68.873
DRR006520Root Summer glycyrrhizin high producing strain65.487
DRR006521Root Winter glycyrrhizin high producing strain115.611
DRR006522Root Winter glycyrrhizin high producing strain113.101
DRR006523Root Summer glycyrrhizin low producing strain66.792
DRR006524Root Summer glycyrrhizin low producing strain65.777
DRR006525Leaf Summer glycyrrhizin high producing strain23.071
DRR006526Leaf Summer glycyrrhizin high producing strain23.347

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)80.909
SRR2868004Drought Stress(Tissue:root)90.692
SRR2967015Control (Tissue:root)82.448

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.075
SRR9715740Leave57.059
SRR9715741Leave54.194
SRR9715739Root42.023
SRR9715742Root50.183
SRR9715743Root44.711

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h82.857
SRR8749028MeJA induced 9h183.695
SRR8749029MeJA induced 9h103.439
SRR8749030Uninduced220.501
SRR8749031Uninduced92.299
SRR8749032Uninduced100.272

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root77.828
SRR8400027Control-Root77.262

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved