Gene detail information of Glyur000512s00017074.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14310.12.00E-118pectin methylesterase 3
NRXP_010543030.10PREDICTED: pectinesterase 2-like [Tarenaya hassleriana]
COGYP_003404589.14.00E-42pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprottr|P83948|PME3_CITSI1.00E-145Pectinesterase 3 (Precursor)
trEMBLtr|G7L9V7|G7L9V7_MEDTR6.00E-160Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005124721954607+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000512s00017074.1PF04043.10PMEI732341.50E-33
Glyur000512s00017074.1PF01095.14Pectinesterase2624794.50E-110


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control303.078
SRR1783600control306.321
SRR1783602moderate drought stress174.814
SRR1811619moderate drought stress173.263

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain143.717
DRR006520Root Summer glycyrrhizin high producing strain141.820
DRR006521Root Winter glycyrrhizin high producing strain2.169
DRR006522Root Winter glycyrrhizin high producing strain2.022
DRR006523Root Summer glycyrrhizin low producing strain53.415
DRR006524Root Summer glycyrrhizin low producing strain53.812
DRR006525Leaf Summer glycyrrhizin high producing strain63.754
DRR006526Leaf Summer glycyrrhizin high producing strain63.149

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)104.690
SRR2868004Drought Stress(Tissue:root)43.380
SRR2967015Control (Tissue:root)59.954

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave80.475
SRR9715740Leave45.091
SRR9715741Leave56.828
SRR9715739Root85.434
SRR9715742Root58.465
SRR9715743Root62.017

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.398
SRR8749028MeJA induced 9h23.020
SRR8749029MeJA induced 9h14.997
SRR8749030Uninduced0.730
SRR8749031Uninduced0.074
SRR8749032Uninduced0.500

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root120.380
SRR8400027Control-Root143.861

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved