Gene detail information of Glyur000512s00017075.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53840.1 | 0 | pectin methylesterase 1 |
| NR | XP_004510571.1 | 0 | PREDICTED: pectinesterase 3-like [Cicer arietinum] |
| COG | YP_003404589.1 | 2.00E-49 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| Swissprot | tr|Q43111|PME3_PHAVU | 0 | Pectinesterase 3 (Precursor) |
| trEMBL | tr|K7KZN7|K7KZN7_SOYBN | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00512 | 58695 | 61953 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000512s00017075.1 | PF04043.10 | PMEI | 75 | 229 | 5.70E-30 |
| Glyur000512s00017075.1 | PF01095.14 | Pectinesterase | 275 | 569 | 2.20E-136 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.398 |
| SRR1783600 | control | 59.794 |
| SRR1783602 | moderate drought stress | 20.711 |
| SRR1811619 | moderate drought stress | 20.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 139.799 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 136.510 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 135.648 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 131.163 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 139.525 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 140.998 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.939 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.024 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.249 |
| SRR2967015 | Control (Tissue:root) | 30.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.803 |
| SRR9715740 | Leave | 4.482 |
| SRR9715741 | Leave | 8.036 |
| SRR9715739 | Root | 166.913 |
| SRR9715742 | Root | 299.976 |
| SRR9715743 | Root | 272.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 134.720 |
| SRR8749028 | MeJA induced 9h | 305.962 |
| SRR8749029 | MeJA induced 9h | 235.572 |
| SRR8749030 | Uninduced | 305.697 |
| SRR8749031 | Uninduced | 21.913 |
| SRR8749032 | Uninduced | 51.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.477 |
| SRR8400027 | Control-Root | 44.610 |