Gene detail information of Glyur000513s00025369.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G69640.17.00E-106sphingoid base hydroxylase 1
NRXP_004490042.16.18E-178PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cicer arietinum]
COGYP_006433261.11.00E-11sterol desaturase [Flexibacter litoralis DSM 6794]
Swissprottr|Q9AST3|SBH2_ARATH9.00E-151Sphinganine C(4)-monooxygenase 2
trEMBLtr|I3T7X2|I3T7X2_LOTJA3.00E-177Uncharacterized protein {ECO:0000313|EMBL:AFK48614.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005132791530400-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04713SUR2 EC:1.14.18.5 Sphingolipid metabolism map00600


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000513s00025369.1PF04116.8FA_hydroxylase982123.30E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.165
SRR1783600control26.421
SRR1783602moderate drought stress40.890
SRR1811619moderate drought stress40.431

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain69.518
DRR006520Root Summer glycyrrhizin high producing strain69.030
DRR006521Root Winter glycyrrhizin high producing strain264.605
DRR006522Root Winter glycyrrhizin high producing strain258.256
DRR006523Root Summer glycyrrhizin low producing strain152.736
DRR006524Root Summer glycyrrhizin low producing strain151.557
DRR006525Leaf Summer glycyrrhizin high producing strain39.021
DRR006526Leaf Summer glycyrrhizin high producing strain39.009

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.809
SRR2868004Drought Stress(Tissue:root)66.548
SRR2967015Control (Tissue:root)79.577

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave141.214
SRR9715740Leave139.363
SRR9715741Leave169.209
SRR9715739Root228.319
SRR9715742Root343.240
SRR9715743Root311.097

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h295.450
SRR8749028MeJA induced 9h298.956
SRR8749029MeJA induced 9h405.396
SRR8749030Uninduced267.379
SRR8749031Uninduced467.215
SRR8749032Uninduced339.480

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.783
SRR8400027Control-Root88.814

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved