Gene detail information of Glyur000514s00017583.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64740.10cellulose synthase 6
NRXP_003536418.10PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Glycine max]
COGYP_007064262.12.00E-14family 2 glycosyl transferase [Calothrix sp. PCC 7507]
Swissprottr|Q94JQ6|CESA6_ARATH0Cellulose synthase A catalytic subunit 6 [UDP-forming]
trEMBLtr|I1LDF0|I1LDF0_SOYBN0Cellulose synthase {ECO:0000256|RuleBase:RU361116}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0051497361103898+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000514s00017583.1PF14569.1zf-UDP311072.40E-42
Glyur000514s00017583.1PF03552.9Cellulose_synt3595086.20E-87
Glyur000514s00017583.1PF03552.9Cellulose_synt5599932.40E-216


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.733
SRR1783600control34.985
SRR1783602moderate drought stress28.218
SRR1811619moderate drought stress28.062

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.849
DRR006520Root Summer glycyrrhizin high producing strain24.737
DRR006521Root Winter glycyrrhizin high producing strain2.733
DRR006522Root Winter glycyrrhizin high producing strain2.639
DRR006523Root Summer glycyrrhizin low producing strain8.156
DRR006524Root Summer glycyrrhizin low producing strain8.398
DRR006525Leaf Summer glycyrrhizin high producing strain7.861
DRR006526Leaf Summer glycyrrhizin high producing strain7.857

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.259
SRR2868004Drought Stress(Tissue:root)34.785
SRR2967015Control (Tissue:root)31.965

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.859
SRR9715740Leave5.038
SRR9715741Leave4.848
SRR9715739Root8.662
SRR9715742Root87.817
SRR9715743Root75.774

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.981
SRR8749028MeJA induced 9h0.792
SRR8749029MeJA induced 9h0.365
SRR8749030Uninduced0.264
SRR8749031Uninduced0.077
SRR8749032Uninduced0.166

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root79.774
SRR8400027Control-Root103.833

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved