Gene detail information of Glyur000515s00023219.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11820.20O-Glycosyl hydrolases family 17 protein
NRXP_003529639.10PREDICTED: glucan endo-1,3-beta-glucosidase 1-like isoform X1 [Glycine max]
Swissprottr|O65399|E131_ARATH0Glucan endo-1,3-beta-glucosidase 1 (Precursor)
trEMBLtr|I1KNE6|I1KNE6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G39140.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005154740550674+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17,CBM43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19891GN1_2_3 EC:3.2.1.39 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000515s00023219.1PF00332.13Glyco_hydro_17423625.50E-79
Glyur000515s00023219.1PF07983.8X83804521.60E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.034
SRR1783600control21.050
SRR1783602moderate drought stress17.008
SRR1811619moderate drought stress16.749

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.947
DRR006520Root Summer glycyrrhizin high producing strain10.888
DRR006521Root Winter glycyrrhizin high producing strain1.563
DRR006522Root Winter glycyrrhizin high producing strain1.706
DRR006523Root Summer glycyrrhizin low producing strain6.353
DRR006524Root Summer glycyrrhizin low producing strain6.124
DRR006525Leaf Summer glycyrrhizin high producing strain6.254
DRR006526Leaf Summer glycyrrhizin high producing strain6.241

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.589
SRR2868004Drought Stress(Tissue:root)9.391
SRR2967015Control (Tissue:root)10.756

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.502
SRR9715740Leave10.368
SRR9715741Leave6.729
SRR9715739Root7.848
SRR9715742Root11.261
SRR9715743Root10.448

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.286
SRR8749028MeJA induced 9h2.012
SRR8749029MeJA induced 9h2.149
SRR8749030Uninduced0.549
SRR8749031Uninduced0.174
SRR8749032Uninduced0.025

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.737
SRR8400027Control-Root19.104

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved