Gene detail information of Glyur000516s00022247.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18170.17.00E-168glutamate dehydrogenase 1
NRXP_004493157.10PREDICTED: glutamate dehydrogenase 1-like isoform X1 [Cicer arietinum]
COGYP_005372351.11.00E-109glutamate dehydrogenase [Corallococcus coralloides DSM 2259]
Swissprottr|Q43314|DHE1_ARATH0Glutamate dehydrogenase 1
trEMBLtr|Q5F2M9|Q5F2M9_SOYBN0Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005161190419943+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00261GLUD1_2, gdhA EC:1.4.1.3 Carbon metabolism map01200
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
D-Glutamine and D-glutamate metabolismmap00471
Proximal tubule bicarbonate reclamationmap04964


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000516s00022247.1PF02812.13ELFV_dehydrog_N231348.10E-39
Glyur000516s00022247.1PF00208.16ELFV_dehydrog1343395.60E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.977
SRR1783600control41.246
SRR1783602moderate drought stress28.566
SRR1811619moderate drought stress27.704

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.971
DRR006520Root Summer glycyrrhizin high producing strain16.136
DRR006521Root Winter glycyrrhizin high producing strain27.556
DRR006522Root Winter glycyrrhizin high producing strain25.252
DRR006523Root Summer glycyrrhizin low producing strain31.157
DRR006524Root Summer glycyrrhizin low producing strain29.795
DRR006525Leaf Summer glycyrrhizin high producing strain14.355
DRR006526Leaf Summer glycyrrhizin high producing strain14.581

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)112.672
SRR2868004Drought Stress(Tissue:root)162.834
SRR2967015Control (Tissue:root)160.677

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.389
SRR9715740Leave22.071
SRR9715741Leave22.371
SRR9715739Root18.329
SRR9715742Root54.653
SRR9715743Root47.887

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h65.629
SRR8749028MeJA induced 9h118.946
SRR8749029MeJA induced 9h85.405
SRR8749030Uninduced192.432
SRR8749031Uninduced385.264
SRR8749032Uninduced265.490

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root79.801
SRR8400027Control-Root90.470

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved