Gene detail information of Glyur000516s00022256.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G54390.46.00E-112PHD finger protein-related
NRNP_001241355.15.00E-175uncharacterized protein LOC100787916 [Glycine max]
Swissprottr|B3H615|ING2_ARATH2.00E-141PHD finger protein ING2
trEMBLtr|C6TJE0|C6TJE0_SOYBN2.00E-175PHD finger protein ING {ECO:0000256|RuleBase:RU361213}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005168271887167-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0016568  chromatin modification


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0035064  methylated histone binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000516s00022256.1PF12998.2ING91261.20E-18
Glyur000516s00022256.1PF00628.24PHD2152631.50E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.067
SRR1783600control32.489
SRR1783602moderate drought stress28.745
SRR1811619moderate drought stress28.060

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.056
DRR006520Root Summer glycyrrhizin high producing strain48.338
DRR006521Root Winter glycyrrhizin high producing strain25.700
DRR006522Root Winter glycyrrhizin high producing strain25.331
DRR006523Root Summer glycyrrhizin low producing strain41.065
DRR006524Root Summer glycyrrhizin low producing strain40.723
DRR006525Leaf Summer glycyrrhizin high producing strain25.055
DRR006526Leaf Summer glycyrrhizin high producing strain25.234

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.261
SRR2868004Drought Stress(Tissue:root)23.693
SRR2967015Control (Tissue:root)26.373

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.812
SRR9715740Leave23.342
SRR9715741Leave19.218
SRR9715739Root8.219
SRR9715742Root15.665
SRR9715743Root12.346

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.312
SRR8749028MeJA induced 9h53.473
SRR8749029MeJA induced 9h48.963
SRR8749030Uninduced34.783
SRR8749031Uninduced48.454
SRR8749032Uninduced34.073

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.925
SRR8400027Control-Root34.109

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved