Gene detail information of Glyur000516s00022263.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G24050.18.00E-29GATA transcription factor 1
NRXP_007161927.17.71E-125hypothetical protein PHAVU_001G109500g [Phaseolus vulgaris]
Swissprottr|O82632|GATA9_ARATH5.00E-38GATA transcription factor 9
trEMBLtr|V7CYD3|V7CYD3_PHAVU3.00E-125Uncharacterized protein {ECO:0000313|EMBL:ESW33921.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00516114754116078-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000516s00022263.1PF00320.22GATA1982327.80E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.144
SRR1783600control8.008
SRR1783602moderate drought stress13.182
SRR1811619moderate drought stress12.769

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.366
DRR006520Root Summer glycyrrhizin high producing strain15.091
DRR006521Root Winter glycyrrhizin high producing strain0.932
DRR006522Root Winter glycyrrhizin high producing strain0.949
DRR006523Root Summer glycyrrhizin low producing strain7.975
DRR006524Root Summer glycyrrhizin low producing strain7.726
DRR006525Leaf Summer glycyrrhizin high producing strain7.663
DRR006526Leaf Summer glycyrrhizin high producing strain7.671

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.284
SRR2868004Drought Stress(Tissue:root)12.905
SRR2967015Control (Tissue:root)16.321

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.918
SRR9715740Leave13.225
SRR9715741Leave8.552
SRR9715739Root16.683
SRR9715742Root13.074
SRR9715743Root13.723

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.562
SRR8749028MeJA induced 9h2.518
SRR8749029MeJA induced 9h1.466
SRR8749030Uninduced1.313
SRR8749031Uninduced0.200
SRR8749032Uninduced1.139

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.398
SRR8400027Control-Root18.455

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved