Gene detail information of Glyur000517s00018387.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41540.306-phosphogluconate dehydrogenase family protein
NRXP_003518136.10PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic-like [Glycine max]
COGYP_004583870.11.00E-13glycerol-3-phosphate dehydrogenase (NAD(P)+) [Frankia symbiont of Datisca glomerata]
Swissprottr|Q8S0G4|GPDH1_ORYSJ0Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
trEMBLtr|K7K9D6|K7K9D6_SOYBN0Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256|RuleBase:RU361243}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005173954843085-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00006GPD1 EC:1.1.1.8 Glycerophospholipid metabolism map00564
MAPK signaling pathway - yeastmap04011


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006072  glycerol-3-phosphate metabolic process

GO:0046168  glycerol-3-phosphate catabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0009331  glycerol-3-phosphate dehydrogenase complex


molecular_function

GO:0004367  glycerol-3-phosphate dehydrogenase [NAD+] activity

GO:0016491  oxidoreductase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000517s00018387.1PF01210.18NAD_Gly3P_dh_N1492505.20E-10
Glyur000517s00018387.1PF07479.9NAD_Gly3P_dh_C2773975.80E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.221
SRR1783600control4.298
SRR1783602moderate drought stress4.993
SRR1811619moderate drought stress4.878

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain2.094
DRR006526Leaf Summer glycyrrhizin high producing strain2.052

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.214
SRR2868004Drought Stress(Tissue:root)15.108
SRR2967015Control (Tissue:root)16.581

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.451
SRR9715740Leave1.278
SRR9715741Leave3.968
SRR9715739Root11.368
SRR9715742Root5.650
SRR9715743Root8.270

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.158
SRR8749028MeJA induced 9h4.535
SRR8749029MeJA induced 9h0.532
SRR8749030Uninduced12.056
SRR8749031Uninduced17.549
SRR8749032Uninduced5.500

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.942
SRR8400027Control-Root61.011

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved