Gene detail information of Glyur000517s00018390.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G57300.10INO80 ortholog
NRXP_004498048.10PREDICTED: DNA helicase INO80-like [Cicer arietinum]
COGYP_004194378.12.00E-53SNF2-like protein [Desulfobulbus propionicus DSM 2032]
Swissprottr|Q8RXS6|INO80_ARATH0DNA helicase INO80
trEMBLtr|I1N8X6|I1N8X6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G31720.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005175327665427-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding

GO:0016817  hydrolase activity, acting on acid anhydrides



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000517s00018390.1PF13892.1DBINO3474804.30E-51
Glyur000517s00018390.1PF00176.18SNF2_N5948939.30E-71
Glyur000517s00018390.1PF00271.26Helicase_C124113191.50E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.289
SRR1783600control11.311
SRR1783602moderate drought stress14.169
SRR1811619moderate drought stress14.061

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.841
DRR006520Root Summer glycyrrhizin high producing strain9.838
DRR006521Root Winter glycyrrhizin high producing strain5.563
DRR006522Root Winter glycyrrhizin high producing strain5.573
DRR006523Root Summer glycyrrhizin low producing strain6.556
DRR006524Root Summer glycyrrhizin low producing strain6.572
DRR006525Leaf Summer glycyrrhizin high producing strain7.569
DRR006526Leaf Summer glycyrrhizin high producing strain7.500

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.741
SRR2868004Drought Stress(Tissue:root)10.555
SRR2967015Control (Tissue:root)8.901

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.963
SRR9715740Leave10.638
SRR9715741Leave14.594
SRR9715739Root0.984
SRR9715742Root10.917
SRR9715743Root9.250

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.364
SRR8749028MeJA induced 9h12.006
SRR8749029MeJA induced 9h7.305
SRR8749030Uninduced5.474
SRR8749031Uninduced4.400
SRR8749032Uninduced3.944

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.811
SRR8400027Control-Root16.392

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved