Gene detail information of Glyur000518s00035538.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31320.1 | 3.00E-50 | LOB domain-containing protein 4 |
| NR | XP_003531496.1 | 3.09E-100 | PREDICTED: LOB domain-containing protein 4-like [Glycine max] |
| Swissprot | tr|Q9SHE9|LBD4_ARATH | 2.00E-71 | LOB domain-containing protein 4 |
| trEMBL | tr|I1KU11|I1KU11_SOYBN | 1.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00518 | 134830 | 138288 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000518s00035538.1 | PF03195.9 | DUF260 | 13 | 112 | 4.50E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.215 |
| SRR1783600 | control | 26.101 |
| SRR1783602 | moderate drought stress | 6.877 |
| SRR1811619 | moderate drought stress | 7.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.511 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.483 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.677 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.373 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.311 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.106 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.851 |
| SRR2967015 | Control (Tissue:root) | 3.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.223 |
| SRR9715740 | Leave | 0.243 |
| SRR9715741 | Leave | 0.144 |
| SRR9715739 | Root | 8.787 |
| SRR9715742 | Root | 2.401 |
| SRR9715743 | Root | 2.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.942 |
| SRR8749028 | MeJA induced 9h | 8.955 |
| SRR8749029 | MeJA induced 9h | 3.951 |
| SRR8749030 | Uninduced | 13.348 |
| SRR8749031 | Uninduced | 6.231 |
| SRR8749032 | Uninduced | 0.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.413 |
| SRR8400027 | Control-Root | 25.122 |