Gene detail information of Glyur000519s00019101.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07430.1 | 1.00E-45 | Pectin lyase-like superfamily protein |
| NR | XP_003541318.1 | 2.78E-90 | PREDICTED: putative pectinesterase 63-like [Glycine max] |
| COG | YP_828954.1 | 2.00E-21 | pectinesterase [Candidatus Solibacter usitatus Ellin6076] |
| Swissprot | tr|Q9LY17|PME50_ARATH | 2.00E-54 | Probable pectinesterase 50 (Precursor) |
| trEMBL | tr|K7LZ37|K7LZ37_SOYBN | 1.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G17390.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00519 | 88926 | 90156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000519s00019101.1 | PF01095.14 | Pectinesterase | 10 | 132 | 1.20E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.399 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.292 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.040 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.337 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.270 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.344 |
| SRR8400027 | Control-Root | 0.324 |