Gene detail information of Glyur000523s00021971.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G73950.13.00E-79Transmembrane Fragile-X-F-associated protein
NRXP_004508572.10PREDICTED: uncharacterized protein LOC101505485 [Cicer arietinum]
Swissprottr|Q9LDD1|BRG3_ARATH9.00E-08Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBLtr|A0A072URU7|A0A072URU7_MEDTR0Transmembrane fragile-X-F-associated protein {ECO:0000313|EMBL:KEH32086.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005231636322948-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000523s00021971.3PF10269.4Tmemb_185A342572.80E-61
Glyur000523s00021971.3PF13920.1zf-C3HC4_33824245.10E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.273
SRR1783600control9.325
SRR1783602moderate drought stress15.290
SRR1811619moderate drought stress14.992

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.492
DRR006520Root Summer glycyrrhizin high producing strain13.637
DRR006521Root Winter glycyrrhizin high producing strain35.329
DRR006522Root Winter glycyrrhizin high producing strain34.555
DRR006523Root Summer glycyrrhizin low producing strain17.085
DRR006524Root Summer glycyrrhizin low producing strain17.333
DRR006525Leaf Summer glycyrrhizin high producing strain28.636
DRR006526Leaf Summer glycyrrhizin high producing strain28.432

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.972
SRR2868004Drought Stress(Tissue:root)34.560
SRR2967015Control (Tissue:root)31.854

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.406
SRR9715740Leave50.304
SRR9715741Leave41.270
SRR9715739Root13.962
SRR9715742Root21.079
SRR9715743Root20.178

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.451
SRR8749028MeJA induced 9h49.267
SRR8749029MeJA induced 9h58.923
SRR8749030Uninduced33.002
SRR8749031Uninduced31.025
SRR8749032Uninduced44.497

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.098
SRR8400027Control-Root22.319

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved