Gene detail information of Glyur000523s00021974.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18550.2 | 2.00E-17 | TCP family transcription factor |
| NR | XP_003550846.2 | 4.47E-82 | PREDICTED: transcription factor TCP12-like [Glycine max] |
| Swissprot | tr|A1YKT1|TCP18_ARATH | 3.00E-26 | Transcription factor TCP18 |
| trEMBL | tr|K7MLA9|K7MLA9_SOYBN | 2.00E-82 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G13065.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00523 | 62992 | 64453 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000523s00021974.1 | PF03634.8 | TCP | 122 | 280 | 1.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.207 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.066 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.354 |
| SRR2967015 | Control (Tissue:root) | 0.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.003 |
| SRR9715740 | Leave | 3.152 |
| SRR9715741 | Leave | 3.840 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 7.692 |
| SRR9715743 | Root | 4.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.143 |
| SRR8400027 | Control-Root | 1.885 |