Gene detail information of Glyur000524s00019120.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12040.1 | 4.00E-100 | DNA-3-methyladenine glycosylase (MAG) |
| NR | XP_004493604.1 | 7.29E-159 | PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Cicer arietinum] |
| COG | YP_003525734.1 | 4.00E-64 | DNA-3-methyladenine glycosylase [Nitrosococcus halophilus Nc 4] |
| Swissprot | tr|Q39147|3MG_ARATH | 9.00E-125 | DNA-3-methyladenine glycosylase |
| trEMBL | tr|I1N9A6|I1N9A6_SOYBN | 4.00E-151 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G33150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00524 | 28853 | 32057 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03652 | MPG | EC:3.2.2.21 | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000524s00019120.1 | PF02245.11 | Pur_DNA_glyco | 104 | 285 | 2.30E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.584 |
| SRR1783600 | control | 6.643 |
| SRR1783602 | moderate drought stress | 5.447 |
| SRR1811619 | moderate drought stress | 5.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.257 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.386 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.291 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.462 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.413 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.589 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.998 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.326 |
| SRR2967015 | Control (Tissue:root) | 3.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.142 |
| SRR9715740 | Leave | 4.495 |
| SRR9715741 | Leave | 2.630 |
| SRR9715739 | Root | 4.869 |
| SRR9715742 | Root | 1.784 |
| SRR9715743 | Root | 2.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.861 |
| SRR8749028 | MeJA induced 9h | 4.687 |
| SRR8749029 | MeJA induced 9h | 5.822 |
| SRR8749030 | Uninduced | 1.763 |
| SRR8749031 | Uninduced | 0.850 |
| SRR8749032 | Uninduced | 0.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.012 |
| SRR8400027 | Control-Root | 4.568 |