Gene detail information of Glyur000524s00019124.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58040.19.00E-135seven in absentia of Arabidopsis 2
NRXP_004493607.10PREDICTED: E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cicer arietinum]
Swissprottr|Q9M2P4|SINA2_ARATH2.00E-169E3 ubiquitin-protein ligase SINAT2
trEMBLtr|C6TM08|C6TM08_SOYBN0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005244235147042+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000524s00019124.1PF03145.11Sina1032856.60E-58


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.726
SRR1783600control3.717
SRR1783602moderate drought stress2.821
SRR1811619moderate drought stress2.713

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.447
DRR006520Root Summer glycyrrhizin high producing strain5.719
DRR006521Root Winter glycyrrhizin high producing strain2.849
DRR006522Root Winter glycyrrhizin high producing strain3.064
DRR006523Root Summer glycyrrhizin low producing strain6.139
DRR006524Root Summer glycyrrhizin low producing strain5.518
DRR006525Leaf Summer glycyrrhizin high producing strain5.844
DRR006526Leaf Summer glycyrrhizin high producing strain5.629

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.901
SRR2868004Drought Stress(Tissue:root)11.382
SRR2967015Control (Tissue:root)11.324

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.892
SRR9715740Leave8.733
SRR9715741Leave8.648
SRR9715739Root1.948
SRR9715742Root4.825
SRR9715743Root3.523

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.363
SRR8749028MeJA induced 9h8.161
SRR8749029MeJA induced 9h4.691
SRR8749030Uninduced6.658
SRR8749031Uninduced7.297
SRR8749032Uninduced3.962

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.345
SRR8400027Control-Root6.686

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved