Gene detail information of Glyur000524s00019125.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58040.12.00E-69seven in absentia of Arabidopsis 2
NRXP_004493607.16.85E-86PREDICTED: E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cicer arietinum]
Swissprottr|Q9M2P4|SINA2_ARATH7.00E-86E3 ubiquitin-protein ligase SINAT2
trEMBLtr|B9T806|B9T806_RICCO7.00E-86E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005245736758605+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000524s00019125.1PF03145.11Sina21211.20E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.296
SRR1783600control1.212
SRR1783602moderate drought stress1.002
SRR1811619moderate drought stress1.343

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.110
DRR006520Root Summer glycyrrhizin high producing strain5.677
DRR006521Root Winter glycyrrhizin high producing strain3.834
DRR006522Root Winter glycyrrhizin high producing strain3.298
DRR006523Root Summer glycyrrhizin low producing strain4.193
DRR006524Root Summer glycyrrhizin low producing strain4.202
DRR006525Leaf Summer glycyrrhizin high producing strain6.098
DRR006526Leaf Summer glycyrrhizin high producing strain5.584

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.982
SRR2868004Drought Stress(Tissue:root)2.290
SRR2967015Control (Tissue:root)1.622

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.082
SRR9715740Leave4.823
SRR9715741Leave3.050
SRR9715739Root1.233
SRR9715742Root1.129
SRR9715743Root1.256

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.753
SRR8749028MeJA induced 9h2.599
SRR8749029MeJA induced 9h1.212
SRR8749030Uninduced1.185
SRR8749031Uninduced2.489
SRR8749032Uninduced3.266

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.060
SRR8400027Control-Root3.859

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved