Gene detail

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Gene detail information of Glyur000525s00018799.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21760.1	1.00E-48	beta-glucosidase 47
NR	KEH38756.1	1.55E-124	glycoside hydrolase family 1 protein [Medicago truncatula]
COG	YP_002251501.1	2.00E-42	beta-glucosidase A [Dictyoglomus thermophilum H-6-12]
Swissprot	tr\|Q7XSK0\|BGL18_ORYSJ	8.00E-59	Beta-glucosidase 18 (Precursor)
trEMBL	tr\|A0A072VAW9\|A0A072VAW9_MEDTR	6.00E-125	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:KEH38756.1}

Sequence

Transcript Sequence

>Glyur000525s00018799.2
CAAGACCAAATCANATCATATCATATCATATTGTATAAACAAAATGAAAATGCCAGAATGGCTGCTGAGCCTTGTGTTTACACTGCTACTTTGCTGTGTTCTTCATTCCCATGAAGTTGAAGATGGAATTATCAGCAGATCTCAATTCCCAAAAGGGTTCCTCTTTGGAGCAAGTACTTCCTCATACCAGATTGAAGGAGCAGCTTTTGAAGATGGTAAAGGTTTAAGCAATTGGGATGTATTCAGTCATACACCAGGGAAGATAAAGAATGGTGAGAATGGCGACATAGCAGATGATCATTATCATCGCTATTTGGAAGACATCAAGTTGATGTCCTCTCTTGGGATAAATGTATATCGATTTTCAATTTCATGGGCTAGGATTCTACCCAGAGGGATATATGGGGACATAAACCCAAGTGGGATTATGTTCTACAACAATGTCNTAGACAATCTGCTGCTTAGAGGGATTGAGCCATTTGTGACAATTCACCATCATGACTTGCCACAAGAACTACAAGAAAGATACGTACTGATGCTAATCCAGGCAAAGCAAGGTGGAACTATTGGCATTGTTATGCATACCTTCACGTATGAACCTCTTAGAGATGAAGAGTGCGATAGACAAGCTATGCGCTCTATTCTTGGGAACCAGTTGCCAAGTTTCTCTCCTAAGGAGAAGAGTCTCCTAAAAGGCACCCTGGACTTCATTGGCATCAATCACTATGGAGCTCTCTATGTCAAGGATTGCTCCCTCTCTTGTTGCCCCCTTGGAGCTGATCGTCCAATAAGAGGCTTTGTGGAAAAATCTGGGATGAGAGATGGCATTCCAATTGGTGATCAGAATATTGTAGACTACATAAAGATGAAATACCATAACATGCCCATGTATATTACAGAAAATGGATATTCTTCACCGCTAGAACCTGTTGTGACAATGCATGATTTACTACATGATTTCAAACGAATAGAGTATCATAAAGCCTACCTTGCAGCTCTGCTTAGAGCCATAAGGAAAGGTGCAGATGTAAGAGGGTATTTGGTATGGTCATTGTTGGACAACTTTGAATGGGATGGTGGCTATGACATAAGATTTGGGCTTTATTACGTGGATAGGCAGACACTTGAACGGATTCCCAAACTTTCTGTTCAATGGTTTTCTAGTTTCCTCAACAACACTGGTGATACCAACAAAGAAGACTTAAGCCAGCAGCAGTATAGAAGCAAAGATGTGAGTGTGACAACTGCTGGTGTCAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00525	4024	7645	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05350	bglB	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000525s00018799.2	PF00232.13	Glyco_hydro_1	32	160	3.20E-59
Glyur000525s00018799.2	PF00232.13	Glyco_hydro_1	195	380	4.80E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.207
SRR1783600	control	3.231
SRR1783602	moderate drought stress	2.314
SRR1811619	moderate drought stress	2.204

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.824
DRR006520	Root Summer glycyrrhizin high producing strain	3.004
DRR006521	Root Winter glycyrrhizin high producing strain	0.340
DRR006522	Root Winter glycyrrhizin high producing strain	0.321
DRR006523	Root Summer glycyrrhizin low producing strain	0.720
DRR006524	Root Summer glycyrrhizin low producing strain	0.685
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.366
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.245

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	17.650
SRR2868004	Drought Stress(Tissue:root)	17.035
SRR2967015	Control (Tissue:root)	17.290

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	12.244
SRR9715740	Leave	8.952
SRR9715741	Leave	12.031
SRR9715739	Root	0.410
SRR9715742	Root	0.935
SRR9715743	Root	1.402

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.633
SRR8749028	MeJA induced 9h	3.008
SRR8749029	MeJA induced 9h	1.780
SRR8749030	Uninduced	3.748
SRR8749031	Uninduced	1.821
SRR8749032	Uninduced	0.836

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.191
SRR8400027	Control-Root	5.284