Gene detail information of Glyur000525s00018816.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53770.1 | 2.00E-150 | Nucleotidyltransferase family protein |
| NR | XP_004487752.1 | 0 | PREDICTED: PAP-associated domain-containing protein 5-like [Cicer arietinum] |
| Swissprot | tr|O82312|PAPS2_ARATH | 5.00E-06 | Nuclear poly(A) polymerase 2 {ECO:0000303|PubMed:18479511} |
| trEMBL | tr|Q2PEP4|Q2PEP4_TRIPR | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:BAE71308.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00525 | 91718 | 97630 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03514 | PAPD5_7, TRF4 | EC:2.7.7.19 | RNA degradation | map03018 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000525s00018816.1 | PF01909.18 | NTP_transf_2 | 145 | 242 | 9.40E-11 |
| Glyur000525s00018816.1 | PF03828.14 | PAP_assoc | 307 | 361 | 1.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.464 |
| SRR1783600 | control | 18.720 |
| SRR1783602 | moderate drought stress | 16.768 |
| SRR1811619 | moderate drought stress | 16.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.978 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.982 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.113 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.867 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.220 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.332 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.119 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.293 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.523 |
| SRR2967015 | Control (Tissue:root) | 22.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.751 |
| SRR9715740 | Leave | 24.633 |
| SRR9715741 | Leave | 27.102 |
| SRR9715739 | Root | 5.695 |
| SRR9715742 | Root | 21.517 |
| SRR9715743 | Root | 19.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.703 |
| SRR8749028 | MeJA induced 9h | 21.562 |
| SRR8749029 | MeJA induced 9h | 18.119 |
| SRR8749030 | Uninduced | 25.343 |
| SRR8749031 | Uninduced | 14.914 |
| SRR8749032 | Uninduced | 10.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.283 |
| SRR8400027 | Control-Root | 19.371 |