Gene detail information of Glyur000525s00018821.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53025.1 | 1.00E-102 | Ubiquitin-conjugating enzyme family protein |
| NR | XP_006594770.1 | 0 | PREDICTED: probable ubiquitin-conjugating enzyme E2 25-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8GY87|UBC26_ARATH | 2.00E-119 | Probable ubiquitin-conjugating enzyme E2 26 |
| trEMBL | tr|K7M2C4|K7M2C4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G35250.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00525 | 112370 | 116458 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10581 | UBE2O | EC:2.3.2.24 | Ubiquitin mediated proteolysis | map04120 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000525s00018821.1 | PF00179.21 | UQ_con | 439 | 558 | 7.50E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.154 |
| SRR1783600 | control | 5.204 |
| SRR1783602 | moderate drought stress | 4.871 |
| SRR1811619 | moderate drought stress | 4.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.695 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.827 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.036 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.940 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.186 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.282 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.297 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.664 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.115 |
| SRR2967015 | Control (Tissue:root) | 8.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.860 |
| SRR9715740 | Leave | 4.739 |
| SRR9715741 | Leave | 5.194 |
| SRR9715739 | Root | 2.174 |
| SRR9715742 | Root | 5.864 |
| SRR9715743 | Root | 4.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.648 |
| SRR8749028 | MeJA induced 9h | 21.308 |
| SRR8749029 | MeJA induced 9h | 15.084 |
| SRR8749030 | Uninduced | 9.451 |
| SRR8749031 | Uninduced | 13.828 |
| SRR8749032 | Uninduced | 15.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.800 |
| SRR8400027 | Control-Root | 5.164 |