Gene detail information of Glyur000525s00018822.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G59440.15.00E-73P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRKHN36819.11.13E-149Thymidylate kinase [Glycine soja]
COGYP_006774606.17.00E-21thymidylate kinase [Candidatus Nitrosopumilus koreensis AR1]
trEMBLtr|I1M384|I1M384_SOYBN4.00E-150Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G35236.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00525119267122899-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00943tmk, DTYMK EC:2.7.4.9 Pyrimidine metabolism map00240


Gene Ontology

biological_process

GO:0006233  dTDP biosynthetic process


molecular_function

GO:0004798  thymidylate kinase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000525s00018822.1PF02223.12Thymidylate_kin651733.10E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.434
SRR1783600control6.662
SRR1783602moderate drought stress5.530
SRR1811619moderate drought stress5.595

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.702
DRR006520Root Summer glycyrrhizin high producing strain8.045
DRR006521Root Winter glycyrrhizin high producing strain2.815
DRR006522Root Winter glycyrrhizin high producing strain2.743
DRR006523Root Summer glycyrrhizin low producing strain9.897
DRR006524Root Summer glycyrrhizin low producing strain9.946
DRR006525Leaf Summer glycyrrhizin high producing strain8.603
DRR006526Leaf Summer glycyrrhizin high producing strain7.977

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.223
SRR2868004Drought Stress(Tissue:root)17.521
SRR2967015Control (Tissue:root)20.411

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.143
SRR9715740Leave12.907
SRR9715741Leave14.855
SRR9715739Root10.815
SRR9715742Root19.193
SRR9715743Root17.369

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.929
SRR8749028MeJA induced 9h10.288
SRR8749029MeJA induced 9h3.961
SRR8749030Uninduced4.312
SRR8749031Uninduced0.665
SRR8749032Uninduced0.575

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.644
SRR8400027Control-Root19.908

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved