Gene detail information of Glyur000527s00032550.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05610.21.00E-83alfin-like 1
NRNP_001239831.12.28E-171uncharacterized protein LOC100793126 [Glycine max]
Swissprottr|Q75IR6|ALFL1_ORYSJ8.00E-120PHD finger protein ALFIN-LIKE 1
trEMBLtr|C6T7X8|C6T7X8_SOYBN9.00E-172Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G29950.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005278241886315-


Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000527s00032550.1PF12165.3DUF359481365.70E-76
Glyur000527s00032550.1PF00628.24PHD1862331.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control130.027
SRR1783600control129.897
SRR1783602moderate drought stress135.335
SRR1811619moderate drought stress135.326

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain160.116
DRR006520Root Summer glycyrrhizin high producing strain157.569
DRR006521Root Winter glycyrrhizin high producing strain104.070
DRR006522Root Winter glycyrrhizin high producing strain101.429
DRR006523Root Summer glycyrrhizin low producing strain174.632
DRR006524Root Summer glycyrrhizin low producing strain174.770
DRR006525Leaf Summer glycyrrhizin high producing strain65.692
DRR006526Leaf Summer glycyrrhizin high producing strain65.676

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)198.929
SRR2868004Drought Stress(Tissue:root)194.195
SRR2967015Control (Tissue:root)215.661

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave119.208
SRR9715740Leave142.824
SRR9715741Leave143.790
SRR9715739Root217.840
SRR9715742Root169.387
SRR9715743Root158.078

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h260.712
SRR8749028MeJA induced 9h132.186
SRR8749029MeJA induced 9h177.201
SRR8749030Uninduced108.771
SRR8749031Uninduced88.653
SRR8749032Uninduced125.961

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root221.670
SRR8400027Control-Root226.987

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved