Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000527s00032552.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01450.1	2.00E-74	RING/U-box superfamily protein
NR	XP_004514227.1	0	PREDICTED: uncharacterized protein LOC101489056 [Cicer arietinum]
Swissprot	tr\|Q4FE47\|XB35_ARATH	1.00E-08	Putative E3 ubiquitin-protein ligase XBAT35
trEMBL	tr\|K7MTI8\|K7MTI8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G43100.2}

Sequence

Transcript Sequence

>Glyur000527s00032552.1
TGCAAACAAACCATTTTCCCAACTACCTTCAGTTCCTAACAACCATTCCGACGAAGAAAACAGAAGAAACAAGAGACCCGTAGTTGAAGACCACGCTTCACTTCACTTCACTTCAATGGAACTTCCTCTCCCTCTCTCCTCAGCGCTACTTTTGTTTCTCTCTCGCACACTCCCTCTGTTTCTCTCTCTAGAATGGCAGAGCCGCATTCCGCTGCTCCTCCTTCTTCAGAGGCNAACGGTGAAGCTTCTCCGTCGGAGGAAAACGCGGCGAACGGCTCTCAAACTCGGTTACTCTCGCCNGACCTCGCACGCGAGTCTCGGCGCGTGAGCAACGCCTTGGGGAGAACCAGCTGGAATCTCGCCGAGGATTCTGCTATTCTTAGGGATGATAAGTGGTCCTGCTTCGCTGTCATCTTCAGCTTTTGGTTCTTTGTTTCGGTGACAATGATACTGGGGGTTTATGGGTCGATGGTTATCGTACTAGGTCCAGATTCTTCAATTGTTTTTCAACCTAGCCCTTTGTTTGTGCAATATGTGAAGGTAGAAAACTTAGAGGCAAAACCAGGACTCATTCTTTATGGTACATATCAATATCCTCCTCTTGATGTAGTTGCCACTTGGGAAGAGACTCGTAATGAATGGAAATATTATCTGAATAGAGGGTCTGAANTAAATATTTCGTATAGCTTGAGCTCTGAGAGCTCCTCCCTTTTCCTTATAATTGCAGAAGGGGCTGAAGGCCTCTCACTGTGGCTGGAGAACCCAACATATCCCAATACAACTCTGTCTTGGAACGTGATCCATGGAACTGGTATGATTACACAGGATATATTCAGGTCATCGAGCTATTATGTGGCATTGGGTAATTTGGAAGAGGAGGTGGAGGTGGAATTAAACATCAGTGTAAAGGCCTTCTTGCATAATACAACGAATGCGTACTACAAATGTTCCCTGACTAGTAGTCCATGCAGTTTGAATATTTTCTTTCCTGATGGAAATGCAGCTGTCTTAAACACATCCAATGATGAGTGGTATGTCAAACTGTCCTATGGACCAAGATGGCTGACATATATTTTTGGCATAGGTGGATTGACTTTGCTAATGTTTTGGGTCTTCAACTACTTGAACAAGCTCCAGTGTGCCCATGAAGATGGAGTAGGTGTTAGATCTGAGGGAACAGCACCTGAGAGAGCCCCTTTGNTTTCTCGCAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTACCACAGGATGAGGAGGATCTTGACTTTCTNNCNGGANNTTCCATTGATGGGAAGCTTTTAGGNGATGGTGAAACCAGTAATAATACCCGGCGTCTTTGTGCAATTTGCTTTGATGCTCCACGNGACTGCTTCTTCCTTCCATGCGGGCACTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGTGGAGGCAGCTGGCACATGCCCTGTTTGTCGTAGGAACATGAAGAAGCCTCCAAACTCACAGGTTATGATAGATCCGGTTCAGAATAATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00527	95148	101631	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000527s00032552.1	PF13920.1	zf-C3HC4_3	384	430	1.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.199
SRR1783600	control	0.161
SRR1783602	moderate drought stress	0.283
SRR1811619	moderate drought stress	0.344

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.098
DRR006522	Root Winter glycyrrhizin high producing strain	0.150
DRR006523	Root Summer glycyrrhizin low producing strain	0.071
DRR006524	Root Summer glycyrrhizin low producing strain	0.072
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.045
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.075

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.207
SRR2868004	Drought Stress(Tissue:root)	1.087
SRR2967015	Control (Tissue:root)	0.914

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	8.656
SRR9715740	Leave	7.308
SRR9715741	Leave	5.042
SRR9715739	Root	0.000
SRR9715742	Root	0.120
SRR9715743	Root	0.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.097
SRR8749028	MeJA induced 9h	0.042
SRR8749029	MeJA induced 9h	0.086
SRR8749030	Uninduced	0.083
SRR8749031	Uninduced	0.136
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.732
SRR8400027	Control-Root	0.627