Gene detail information of Glyur000528s00024892.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33080.10AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
NRXP_003547484.10PREDICTED: probable serine/threonine-protein kinase ndrB-like isoform X1 [Glycine max]
COGYP_643722.13.00E-24serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|Q9LE81|IRE_ARATH6.00E-69Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBLtr|K7MBZ6|K7MBZ6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G18820.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005282906437087-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000528s00024892.1PF00069.20Pkinase1172647.30E-41
Glyur000528s00024892.1PF00069.20Pkinase3214081.10E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.059
SRR1783600control16.375
SRR1783602moderate drought stress19.111
SRR1811619moderate drought stress18.744

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.749
DRR006520Root Summer glycyrrhizin high producing strain23.893
DRR006521Root Winter glycyrrhizin high producing strain95.466
DRR006522Root Winter glycyrrhizin high producing strain91.743
DRR006523Root Summer glycyrrhizin low producing strain30.417
DRR006524Root Summer glycyrrhizin low producing strain30.843
DRR006525Leaf Summer glycyrrhizin high producing strain7.444
DRR006526Leaf Summer glycyrrhizin high producing strain7.100

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.037
SRR2868004Drought Stress(Tissue:root)22.593
SRR2967015Control (Tissue:root)35.778

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.978
SRR9715740Leave27.617
SRR9715741Leave23.782
SRR9715739Root3.263
SRR9715742Root15.921
SRR9715743Root14.257

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.138
SRR8749028MeJA induced 9h2.664
SRR8749029MeJA induced 9h2.069
SRR8749030Uninduced3.456
SRR8749031Uninduced2.600
SRR8749032Uninduced2.255

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.590
SRR8400027Control-Root18.523

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved