Gene detail information of Glyur000529s00019344.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G14610.10valyl-tRNA synthetase / valine--tRNA ligase (VALRS)
NRXP_007143365.10hypothetical protein PHAVU_007G066400g [Phaseolus vulgaris]
COGYP_632631.10valyl-tRNA synthetase [Myxococcus xanthus DK 1622]
Swissprottr|P93736|SYV_ARATH0Valine--tRNA ligase
trEMBLtr|V7BC06|V7BC06_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW15359.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005296162370170-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01873VARS, valS EC:6.1.1.9 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006438  valyl-tRNA aminoacylation


molecular_function

GO:0000166  nucleotide binding

GO:0002161  aminoacyl-tRNA editing activity

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004832  valine-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000529s00019344.1PF00133.17tRNA-synt_11067292.20E-199
Glyur000529s00019344.1PF08264.8Anticodon_17749161.80E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.239
SRR1783600control32.216
SRR1783602moderate drought stress31.718
SRR1811619moderate drought stress31.601

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain38.946
DRR006520Root Summer glycyrrhizin high producing strain38.549
DRR006521Root Winter glycyrrhizin high producing strain33.485
DRR006522Root Winter glycyrrhizin high producing strain32.540
DRR006523Root Summer glycyrrhizin low producing strain33.583
DRR006524Root Summer glycyrrhizin low producing strain33.467
DRR006525Leaf Summer glycyrrhizin high producing strain16.897
DRR006526Leaf Summer glycyrrhizin high producing strain16.865

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)66.355
SRR2868004Drought Stress(Tissue:root)60.407
SRR2967015Control (Tissue:root)56.651

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.407
SRR9715740Leave30.626
SRR9715741Leave29.837
SRR9715739Root7.133
SRR9715742Root42.685
SRR9715743Root37.106

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.702
SRR8749028MeJA induced 9h52.469
SRR8749029MeJA induced 9h42.282
SRR8749030Uninduced20.259
SRR8749031Uninduced18.581
SRR8749032Uninduced20.266

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root50.335
SRR8400027Control-Root48.208

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved