Gene detail information of Glyur000529s00019352.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51910.2 | 2.00E-51 | TCP family transcription factor |
| NR | XP_004496621.1 | 4.12E-136 | PREDICTED: transcription factor TCP9-like [Cicer arietinum] |
| Swissprot | tr|Q9LT89|TCP19_ARATH | 3.00E-71 | Transcription factor TCP19 |
| trEMBL | tr|K7N3M1|K7N3M1_SOYBN | 6.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G29330.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00529 | 108026 | 109446 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000529s00019352.1 | PF03634.8 | TCP | 92 | 182 | 3.10E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.245 |
| SRR1783600 | control | 0.169 |
| SRR1783602 | moderate drought stress | 0.582 |
| SRR1811619 | moderate drought stress | 0.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.469 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.580 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.580 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.596 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.156 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.749 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.231 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.566 |
| SRR2967015 | Control (Tissue:root) | 4.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.517 |
| SRR9715740 | Leave | 4.594 |
| SRR9715741 | Leave | 10.660 |
| SRR9715739 | Root | 1.728 |
| SRR9715742 | Root | 5.318 |
| SRR9715743 | Root | 4.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.048 |
| SRR8749028 | MeJA induced 9h | 36.964 |
| SRR8749029 | MeJA induced 9h | 28.495 |
| SRR8749030 | Uninduced | 11.608 |
| SRR8749031 | Uninduced | 2.307 |
| SRR8749032 | Uninduced | 9.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.527 |
| SRR8400027 | Control-Root | 1.069 |