Gene detail information of Glyur000532s00020750.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 8.00E-23 | F-box family protein |
| NR | XP_004486107.1 | 1.14E-87 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] |
| Swissprot | tr|Q8GXC7|FBK50_ARATH | 2.00E-24 | F-box/kelch-repeat protein At3g06240 |
| trEMBL | tr|A0A072V503|A0A072V503_MEDTR | 4.00E-81 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH36751.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00532 | 7 | 26878 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000532s00020750.2 | PF00646.28 | F-box | 69 | 104 | 4.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.339 |
| SRR1783600 | control | 4.195 |
| SRR1783602 | moderate drought stress | 5.464 |
| SRR1811619 | moderate drought stress | 5.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.795 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.330 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.154 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.369 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.812 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.398 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.936 |
| SRR2967015 | Control (Tissue:root) | 4.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.949 |
| SRR9715740 | Leave | 12.632 |
| SRR9715741 | Leave | 13.107 |
| SRR9715739 | Root | 5.255 |
| SRR9715742 | Root | 4.895 |
| SRR9715743 | Root | 5.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.878 |
| SRR8749028 | MeJA induced 9h | 10.851 |
| SRR8749029 | MeJA induced 9h | 6.887 |
| SRR8749030 | Uninduced | 8.783 |
| SRR8749031 | Uninduced | 5.289 |
| SRR8749032 | Uninduced | 5.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.401 |
| SRR8400027 | Control-Root | 5.012 |