Gene detail information of Glyur000532s00020754.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 1.00E-15 | F-box family protein |
| NR | KEH36751.1 | 3.94E-131 | F-box protein interaction domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 1.00E-14 | F-box protein CPR30 |
| trEMBL | tr|A0A072V503|A0A072V503_MEDTR | 1.00E-131 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH36751.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00532 | 37468 | 40693 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.360 |
| SRR1783600 | control | 7.394 |
| SRR1783602 | moderate drought stress | 7.688 |
| SRR1811619 | moderate drought stress | 7.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.559 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.406 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.218 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.224 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.424 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.250 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.467 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.154 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.273 |
| SRR2967015 | Control (Tissue:root) | 6.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.000 |
| SRR9715740 | Leave | 3.235 |
| SRR9715741 | Leave | 4.298 |
| SRR9715739 | Root | 7.118 |
| SRR9715742 | Root | 5.757 |
| SRR9715743 | Root | 7.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.162 |
| SRR8749028 | MeJA induced 9h | 15.768 |
| SRR8749029 | MeJA induced 9h | 12.362 |
| SRR8749030 | Uninduced | 14.595 |
| SRR8749031 | Uninduced | 6.982 |
| SRR8749032 | Uninduced | 8.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.247 |
| SRR8400027 | Control-Root | 6.214 |