Gene detail information of Glyur000532s00020755.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23880.1 | 9.00E-48 | F-box and associated interaction domains-containing protein |
| NR | NP_001241466.1 | 0 | uncharacterized protein LOC100815072 [Glycine max] |
| Swissprot | tr|Q9LIR8|FBK67_ARATH | 1.00E-55 | F-box/kelch-repeat protein At3g23880 |
| trEMBL | tr|C6TAK5|C6TAK5_SOYBN | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU18857.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00532 | 43128 | 47361 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000532s00020755.1 | PF00646.28 | F-box | 137 | 177 | 3.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.145 |
| SRR1783600 | control | 12.407 |
| SRR1783602 | moderate drought stress | 31.974 |
| SRR1811619 | moderate drought stress | 32.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.705 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.999 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 297.330 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 289.625 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.924 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.690 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.163 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.311 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.932 |
| SRR2967015 | Control (Tissue:root) | 13.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.454 |
| SRR9715740 | Leave | 50.980 |
| SRR9715741 | Leave | 28.917 |
| SRR9715739 | Root | 14.125 |
| SRR9715742 | Root | 10.800 |
| SRR9715743 | Root | 10.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.210 |
| SRR8749028 | MeJA induced 9h | 5.055 |
| SRR8749029 | MeJA induced 9h | 1.448 |
| SRR8749030 | Uninduced | 0.773 |
| SRR8749031 | Uninduced | 2.019 |
| SRR8749032 | Uninduced | 3.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.805 |
| SRR8400027 | Control-Root | 12.258 |