Gene detail information of Glyur000532s00020763.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15475.1 | 0 | F-box/RNI-like superfamily protein |
| NR | XP_004486096.1 | 0 | PREDICTED: F-box/LRR-repeat protein 4-like [Cicer arietinum] |
| COG | YP_008914.1 | 2.00E-28 | hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9C5D2|FBL4_ARATH | 0 | F-box/LRR-repeat protein 4 |
| trEMBL | tr|V7BPB9|V7BPB9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW19814.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00532 | 74489 | 80630 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000532s00020763.1 | PF12937.2 | F-box-like | 11 | 42 | 5.10E-06 |
| Glyur000532s00020763.1 | PF13516.1 | LRR_6 | 190 | 213 | 0.14 |
| Glyur000532s00020763.1 | PF13516.1 | LRR_6 | 319 | 342 | 0.012 |
| Glyur000532s00020763.1 | PF13516.1 | LRR_6 | 475 | 497 | 0.056 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.456 |
| SRR1783600 | control | 11.311 |
| SRR1783602 | moderate drought stress | 21.394 |
| SRR1811619 | moderate drought stress | 21.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.885 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.305 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.644 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.651 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.555 |
| SRR2868004 | Drought Stress(Tissue:root) | 30.364 |
| SRR2967015 | Control (Tissue:root) | 33.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.657 |
| SRR9715740 | Leave | 16.035 |
| SRR9715741 | Leave | 18.371 |
| SRR9715739 | Root | 16.683 |
| SRR9715742 | Root | 19.864 |
| SRR9715743 | Root | 19.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.740 |
| SRR8749028 | MeJA induced 9h | 10.365 |
| SRR8749029 | MeJA induced 9h | 5.189 |
| SRR8749030 | Uninduced | 11.123 |
| SRR8749031 | Uninduced | 11.783 |
| SRR8749032 | Uninduced | 13.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.129 |
| SRR8400027 | Control-Root | 26.359 |