Gene detail

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Gene detail information of Glyur000532s00020764.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18930.1	2.00E-115	Adenosylmethionine decarboxylase family protein
NR	XP_007147821.1	0	hypothetical protein PHAVU_006G157800g [Phaseolus vulgaris]
Swissprot	tr\|Q3E9D5\|DCAM4_ARATH	3.00E-146	S-adenosylmethionine decarboxylase 1 beta chain {ECO:0000250\|UniProtKB:P17707} (Precursor)
trEMBL	tr\|V7BRZ3\|V7BRZ3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19815.1}

Sequence

Transcript Sequence

>Glyur000532s00020764.1
ATGGCAATGTCCGGTTTTGAAGGGTTTGAGAAACGGTTGGAGCTCCATTTCTTTGGTTATGACCCAAGCACCAATCTCCAACTGGGTCTAAGAAAACTTGACTTTGAATGCATCCAACAAACACTAGAAGCTGTCCAATGCACGGTGGTTTCAGCCGTTGGGAATTCCTACTTCGACGCCTATGTGTTATCAGAATCAAGCCTCTTTGTATACCCAACCAAGATCATCATCAAAACCTGTGGGACCACCCAGCTCCTCAAATCCATCACCCCTTTGATCCACTACGCACAAAGCCACCTAGGACTCACCCTCACTTCTTGCCACTACACACGTGGCAGCTTCATCTTCCCAAAGTCACAACCTTTCCCTCACACCTCCTTCAATGACGAAGTCACCTACTTAGAAAACACCATCCCTTCAAATCTCTCCTTCAGAAAAGCCTCCATCATGCCTTCGAAATCTTCGTCACATGCATGGCACGTTTTCACTGCCACCACCCATACCCAGCACGAAACTCTGCACCACGAACCATACACGGTGGAGATCTGCATGACGGAGCTCGACCCCATCCTCGCCATGAAATTCTTCCGGCGACCCGGCGACGGAAAATCCGGCGACTCTGCCGGAAAAGCGATGACGGAGCTAACGGGCATCGATGGAATCAACAGGGACGCGCTCGTGTGCGATTTCGCGTTCGACCCGTGTGGGTATTCCATGAATGGCATGGATGGGGAGTGGTATTCCACCATTCACGTAACCCCAGAAGATGGTTATAGCTATGCGAGCTTCGAATGTGTGGGGTCCATGAAAACCGACATAGTCCACGTGTTGAGGAAGGTGGTTCAGATTTTCCGACCGGGTACTATGTCGGTGTCGACGACGTGCGGTGGTGGCAATGATCAGGTGTGGAGGAAGGTTTCCGGTGCGGTGGAGCCTCTTGGGTTGAAATGCCGGAGTTGTGTGATGGACCAGTTTCCGGAAGCAGGTAGTGTTGTGTTTCAAACGTTCACGCCTCTTCGCCGGAAAAGTAGTAGCAAAGCTAGGAGGAATATTGGAAAATTGATGAATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00532	83277	84347	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01611	speD, AMD1	EC:4.1.1.50	Cysteine and methionine metabolism	map00270
K01611	speD, AMD1	EC:4.1.1.50	Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006597 spermine biosynthetic process

GO:0008295 spermidine biosynthetic process

molecular_function GO:0004014 adenosylmethionine decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000532s00020764.1	PF01536.11	SAM_decarbox	4	336	3.00E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.398
SRR1783600	control	0.410
SRR1783602	moderate drought stress	0.587
SRR1811619	moderate drought stress	0.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.259
DRR006520	Root Summer glycyrrhizin high producing strain	1.224
DRR006521	Root Winter glycyrrhizin high producing strain	0.104
DRR006522	Root Winter glycyrrhizin high producing strain	0.102
DRR006523	Root Summer glycyrrhizin low producing strain	0.364
DRR006524	Root Summer glycyrrhizin low producing strain	0.309
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.087
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.087

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.819
SRR2868004	Drought Stress(Tissue:root)	5.413
SRR2967015	Control (Tissue:root)	2.917

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.116
SRR9715741	Leave	0.273
SRR9715739	Root	0.023
SRR9715742	Root	0.688
SRR9715743	Root	0.403

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.643
SRR8400027	Control-Root	0.680