Gene detail information of Glyur000532s00020771.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03000.2 | 1.00E-94 | RING/U-box superfamily protein |
| NR | KHN37538.1 | 0 | Putative E3 ubiquitin-protein ligase RF298 [Glycine soja] |
| Swissprot | tr|Q0WPJ7|RF298_ARATH | 2.00E-170 | Putative E3 ubiquitin-protein ligase RF298 |
| trEMBL | tr|I1M187|I1M187_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G28330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00532 | 126234 | 130586 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| EAR motif-containing Proteins | other |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000532s00020771.1 | PF13920.1 | zf-C3HC4_3 | 830 | 877 | 3.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.048 |
| SRR1783600 | control | 15.988 |
| SRR1783602 | moderate drought stress | 16.256 |
| SRR1811619 | moderate drought stress | 16.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.153 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.901 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.962 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.463 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.940 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.888 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.271 |
| SRR2868004 | Drought Stress(Tissue:root) | 34.053 |
| SRR2967015 | Control (Tissue:root) | 31.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 32.179 |
| SRR9715740 | Leave | 43.082 |
| SRR9715741 | Leave | 34.628 |
| SRR9715739 | Root | 2.716 |
| SRR9715742 | Root | 18.023 |
| SRR9715743 | Root | 14.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.689 |
| SRR8749028 | MeJA induced 9h | 21.765 |
| SRR8749029 | MeJA induced 9h | 17.278 |
| SRR8749030 | Uninduced | 16.367 |
| SRR8749031 | Uninduced | 15.295 |
| SRR8749032 | Uninduced | 12.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.382 |
| SRR8400027 | Control-Root | 24.532 |