Gene detail information of Glyur000533s00015037.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49180.1 | 2.00E-137 | Transducin/WD40 repeat-like superfamily protein |
| NR | KHN45100.1 | 0 | WD repeat-containing protein 18 [Glycine soja] |
| COG | YP_007125206.1 | 3.00E-20 | WD40 repeat-containing protein [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q9M3B4|RID3_ARATH | 7.00E-169 | Protein ROOT INITIATION DEFECTIVE 3 |
| trEMBL | tr|I1KWK6|I1KWK6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G27980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00533 | 29655 | 34222 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000533s00015037.1 | PF00400.27 | WD40 | 112 | 148 | 1.10E-08 |
| Glyur000533s00015037.1 | PF00400.27 | WD40 | 166 | 203 | 0.00026 |
| Glyur000533s00015037.1 | PF00400.27 | WD40 | 261 | 295 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.736 |
| SRR1783600 | control | 0.632 |
| SRR1783602 | moderate drought stress | 0.553 |
| SRR1811619 | moderate drought stress | 0.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.029 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.965 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.904 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.455 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.110 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.969 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.548 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.216 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.170 |
| SRR2967015 | Control (Tissue:root) | 4.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.788 |
| SRR9715740 | Leave | 1.931 |
| SRR9715741 | Leave | 4.340 |
| SRR9715739 | Root | 0.816 |
| SRR9715742 | Root | 1.046 |
| SRR9715743 | Root | 1.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.155 |
| SRR8749028 | MeJA induced 9h | 0.955 |
| SRR8749029 | MeJA induced 9h | 1.320 |
| SRR8749030 | Uninduced | 0.357 |
| SRR8749031 | Uninduced | 0.172 |
| SRR8749032 | Uninduced | 0.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.553 |
| SRR8400027 | Control-Root | 12.038 |