Gene detail information of Glyur000533s00015057.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G43420.12.00E-1473-beta hydroxysteroid dehydrogenase/isomerase family protein
NRXP_003540692.10PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like isoform X1 [Glycine max]
COGYP_002604520.13.00E-403-beta hydroxysteroid dehydrogenase/isomerase family protein [Desulfobacterium autotrophicum HRM2]
Swissprottr|A9X4U2|HSDD3_ARATH03beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3
trEMBLtr|K7LT52|K7LT52_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G05480.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00533137930144493-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07748E1.1.1.170, NSDHL, ERG26 EC:1.1.1.170 Steroid biosynthesis map00100


Gene Ontology

biological_process

GO:0006694  steroid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003854  3-beta-hydroxy-delta5-steroid dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000533s00015057.1PF01073.143Beta_HSD172879.00E-70
Glyur000533s00015057.1PF02453.12Reticulon3815397.40E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.495
SRR1783600control10.362
SRR1783602moderate drought stress7.331
SRR1811619moderate drought stress7.362

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.285
DRR006520Root Summer glycyrrhizin high producing strain9.222
DRR006521Root Winter glycyrrhizin high producing strain8.671
DRR006522Root Winter glycyrrhizin high producing strain8.444
DRR006523Root Summer glycyrrhizin low producing strain7.596
DRR006524Root Summer glycyrrhizin low producing strain7.896
DRR006525Leaf Summer glycyrrhizin high producing strain7.501
DRR006526Leaf Summer glycyrrhizin high producing strain7.761

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.709
SRR2868004Drought Stress(Tissue:root)20.943
SRR2967015Control (Tissue:root)19.223

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.915
SRR9715740Leave3.915
SRR9715741Leave5.121
SRR9715739Root3.181
SRR9715742Root7.610
SRR9715743Root6.257

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.590
SRR8749028MeJA induced 9h12.309
SRR8749029MeJA induced 9h9.233
SRR8749030Uninduced5.312
SRR8749031Uninduced5.111
SRR8749032Uninduced4.194

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.969
SRR8400027Control-Root18.313

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved