Gene detail information of Glyur000535s00027354.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G01470.14.00E-36homeobox 1
NRXP_007157405.10hypothetical protein PHAVU_002G067200g [Phaseolus vulgaris]
Swissprottr|Q02283|HAT5_ARATH3.00E-42Homeobox-leucine zipper protein HAT5
trEMBLtr|Q93XA4|Q93XA4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW29399.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005351854120733+


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000535s00027354.1PF00046.24Homeobox941473.30E-16
Glyur000535s00027354.1PF02183.13HALZ1491917.10E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.177
SRR1783600control39.320
SRR1783602moderate drought stress67.738
SRR1811619moderate drought stress67.799

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.149
DRR006520Root Summer glycyrrhizin high producing strain28.489
DRR006521Root Winter glycyrrhizin high producing strain10.474
DRR006522Root Winter glycyrrhizin high producing strain10.568
DRR006523Root Summer glycyrrhizin low producing strain17.309
DRR006524Root Summer glycyrrhizin low producing strain17.456
DRR006525Leaf Summer glycyrrhizin high producing strain13.892
DRR006526Leaf Summer glycyrrhizin high producing strain13.745

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.866
SRR2868004Drought Stress(Tissue:root)23.274
SRR2967015Control (Tissue:root)22.494

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.619
SRR9715740Leave31.129
SRR9715741Leave25.962
SRR9715739Root5.675
SRR9715742Root36.881
SRR9715743Root30.418

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.289
SRR8749028MeJA induced 9h23.736
SRR8749029MeJA induced 9h6.746
SRR8749030Uninduced48.897
SRR8749031Uninduced5.744
SRR8749032Uninduced6.498

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.497
SRR8400027Control-Root29.048

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved