Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000537s00024609.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06060.1	5.00E-96	NAD(P)-binding Rossmann-fold superfamily protein
NR	KEH34753.1	2.18E-178	NAD(P)-binding rossmann-fold protein [Medicago truncatula]
COG	YP_007318338.1	9.00E-81	dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9ASX2\|TRNH1_ARATH	5.00E-120	Tropinone reductase homolog At1g07440
trEMBL	tr\|A0A072V040\|A0A072V040_MEDTR	8.00E-179	NAD(P)-binding rossmann-fold protein {ECO:0000313\|EMBL:KEH34753.1}

Sequence

Transcript Sequence

>Glyur000537s00024609.1
ATTGTAGGCCTCAGATACTGAATAAACGACAAACATGTTTGCGTTTTGACTTCTGAGGAAGAGGAGTTAATGGTGATAACTGATAAAGCTAGTACAGACAAATGAAATGGCAGCTGCAGAGGGCAGTACCAATGGAGCCTCGAGATGGTCCCTCAACGGAAAGACTGCTCTCGTCACCGGTGGAACCCGTGGGATTGGGCATGCCATAGTGGAGGAGTTATGTGGGTTTGGTGCCACCGTCCACACTTGTTCCAGAAACCAAGCAGAGCTCAACAAGTGCTTGGATGAATGGCGGGGTAAAGGCTTTTCGGTTTCTGGGTCGGTGTGTGACGTGTCATCTCGAGCCCAAAGGGAGAAGCTCATTCAGGAAGTGACATCCCTCTTCAACGGCAAACTCAACATTTATGTGAACAATGTTGGGGCAAACTTTAGGAAGCCAACCATTGAGTACACTGCTGAAGTCTATTCAGAAATTATGGCAATCAATTTAGATTCTGCATATCATTTGTGCCAACTTACATATCCTCTTCTAAAGGCATCTGGAGTGGGAAGCATTGTTTTCATTTCATCTATTGCTGGTGTGGTGAGCTTAGGTACTGGATCAGTCTATGCAGCAAGTAAAGCTGCAATCAATCAGCTTACAAAAACTCTGGCTTGTGAATGGGCAAAAGACAACATAAGGAGCAATTGTGTTGTTCCTGCTACCACCAATACACCACTTGTGGAACATCTTCTTCGCAACAAGCAGTATGTAGATGAAATGTTGTCTCGAACTCCGATCGGGCGCATCGCAGAAGCTCAAGAAGTTTCATCNTTGGTGGCTTTCCTTTGTCTGCCTGCTGCCTCTTACATCACAGGACAGGTTATTTGTGTTGATGGAGGATTAACAGTGAATGGGTTTCAGCCCAGCATGAGAATAACATAACAACATTCATGTACTATCTCCAATCTAGTGTCAATCATCTTTGGAATAAGGCATATCCTTATTCTTTCATTTGATTTCTTCCTTGGTGCTTTTGCTTTATCTAGCCTTCTGCCCATATATGGGAGAAGTTATTTTTGTTGATGGAAAAGAAACTTTAAGTGCATTTCTACCCCAGCATAAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00537	84642	88706	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08081	TR1	EC:1.1.1.206	Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000537s00024609.1	PF00106.20	adh_short	19	186	6.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.984
SRR1783600	control	4.028
SRR1783602	moderate drought stress	3.159
SRR1811619	moderate drought stress	3.286

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.694
DRR006520	Root Summer glycyrrhizin high producing strain	6.678
DRR006521	Root Winter glycyrrhizin high producing strain	5.640
DRR006522	Root Winter glycyrrhizin high producing strain	5.484
DRR006523	Root Summer glycyrrhizin low producing strain	6.626
DRR006524	Root Summer glycyrrhizin low producing strain	6.443
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.630
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.844

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	14.081
SRR2868004	Drought Stress(Tissue:root)	10.080
SRR2967015	Control (Tissue:root)	9.455

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.324
SRR9715740	Leave	13.975
SRR9715741	Leave	11.468
SRR9715739	Root	3.977
SRR9715742	Root	5.603
SRR9715743	Root	4.091

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.232
SRR8749028	MeJA induced 9h	9.656
SRR8749029	MeJA induced 9h	7.442
SRR8749030	Uninduced	6.874
SRR8749031	Uninduced	2.800
SRR8749032	Uninduced	3.957

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.812
SRR8400027	Control-Root	9.126