Gene detail information of Glyur000537s00024614.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58140.12.00E-166phenylalanyl-tRNA synthetase class IIc family protein
NRXP_006603041.10PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1 [Glycine max]
COGYP_003825775.17.00E-38phenylalanyl-tRNA synthetase subunit alpha [Thermosediminibacter oceani DSM 16646]
Swissprottr|Q94K73|SYFM_ARATH0Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|K7MVE7|K7MVE7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G52890.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00537108140115866+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01889FARSA, pheS EC:6.1.1.20 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006432  phenylalanyl-tRNA aminoacylation

GO:0008033  tRNA processing

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000049  tRNA binding

GO:0000287  magnesium ion binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004826  phenylalanine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000537s00024614.1PF01409.15tRNA-synt_2d913263.30E-50
Glyur000537s00024614.1PF03147.9FDX-ACB3393949.10E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.279
SRR1783600control7.299
SRR1783602moderate drought stress7.645
SRR1811619moderate drought stress7.637

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.948
DRR006520Root Summer glycyrrhizin high producing strain12.259
DRR006521Root Winter glycyrrhizin high producing strain7.214
DRR006522Root Winter glycyrrhizin high producing strain7.166
DRR006523Root Summer glycyrrhizin low producing strain10.458
DRR006524Root Summer glycyrrhizin low producing strain10.664
DRR006525Leaf Summer glycyrrhizin high producing strain26.214
DRR006526Leaf Summer glycyrrhizin high producing strain25.553

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.043
SRR2868004Drought Stress(Tissue:root)13.772
SRR2967015Control (Tissue:root)11.705

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.744
SRR9715740Leave28.516
SRR9715741Leave16.668
SRR9715739Root3.951
SRR9715742Root5.820
SRR9715743Root6.254

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.866
SRR8749028MeJA induced 9h12.374
SRR8749029MeJA induced 9h8.280
SRR8749030Uninduced14.747
SRR8749031Uninduced7.580
SRR8749032Uninduced7.290

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.670
SRR8400027Control-Root15.522

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved