Gene detail information of Glyur000538s00027550.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G63440.10cytokinin oxidase/dehydrogenase 6
NRXP_007131444.10hypothetical protein PHAVU_011G014000g [Phaseolus vulgaris]
COGYP_007093009.18.00E-83FAD linked oxidase domain-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q9LY71|CKX6_ARATH0Cytokinin dehydrogenase 6 (Precursor)
trEMBLtr|V7AF09|V7AF09_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW03438.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005382474227310+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00279CKX EC:1.5.99.12 Zeatin biosynthesis map00908


Gene Ontology

biological_process

GO:0009690  cytokinin metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0008762  UDP-N-acetylmuramate dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016614  oxidoreductase activity, acting on CH-OH group of donors

GO:0019139  cytokinin dehydrogenase activity

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000538s00027550.1PF01565.18FAD_binding_4752184.30E-22
Glyur000538s00027550.1PF09265.5Cytokin-bind2505263.50E-115


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.151
SRR1783600control2.086
SRR1783602moderate drought stress1.503
SRR1811619moderate drought stress1.413

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.700
DRR006520Root Summer glycyrrhizin high producing strain9.913
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain7.985
DRR006524Root Summer glycyrrhizin low producing strain7.943
DRR006525Leaf Summer glycyrrhizin high producing strain1.312
DRR006526Leaf Summer glycyrrhizin high producing strain1.201

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.838
SRR2868004Drought Stress(Tissue:root)4.545
SRR2967015Control (Tissue:root)6.030

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.801
SRR9715740Leave3.568
SRR9715741Leave3.477
SRR9715739Root0.798
SRR9715742Root7.924
SRR9715743Root5.657

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h276.603
SRR8749028MeJA induced 9h80.948
SRR8749029MeJA induced 9h99.911
SRR8749030Uninduced69.664
SRR8749031Uninduced15.892
SRR8749032Uninduced35.345

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.003
SRR8400027Control-Root5.245

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved