Gene detail information of Glyur000538s00027551.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07690.106-phosphogluconate dehydrogenase family protein
NRXP_004513266.10PREDICTED: probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic-like [Cicer arietinum]
COGYP_004583870.13.00E-12glycerol-3-phosphate dehydrogenase (NAD(P)+) [Frankia symbiont of Datisca glomerata]
Swissprottr|Q8S0G4|GPDH1_ORYSJ0Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
trEMBLtr|I1LNZ9|I1LNZ9_SOYBN0Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256|RuleBase:RU361243}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005383469139288+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00006GPD1 EC:1.1.1.8 Glycerophospholipid metabolism map00564
MAPK signaling pathway - yeastmap04011


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006072  glycerol-3-phosphate metabolic process

GO:0046168  glycerol-3-phosphate catabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0009331  glycerol-3-phosphate dehydrogenase complex


molecular_function

GO:0004367  glycerol-3-phosphate dehydrogenase [NAD+] activity

GO:0016491  oxidoreductase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000538s00027551.1PF01210.18NAD_Gly3P_dh_N1482492.70E-09
Glyur000538s00027551.1PF07479.9NAD_Gly3P_dh_C2764334.00E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.561
SRR1783600control16.722
SRR1783602moderate drought stress14.083
SRR1811619moderate drought stress13.959

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.441
DRR006520Root Summer glycyrrhizin high producing strain17.333
DRR006521Root Winter glycyrrhizin high producing strain16.948
DRR006522Root Winter glycyrrhizin high producing strain16.361
DRR006523Root Summer glycyrrhizin low producing strain17.016
DRR006524Root Summer glycyrrhizin low producing strain16.713
DRR006525Leaf Summer glycyrrhizin high producing strain5.029
DRR006526Leaf Summer glycyrrhizin high producing strain5.007

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.845
SRR2868004Drought Stress(Tissue:root)23.456
SRR2967015Control (Tissue:root)24.583

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.383
SRR9715740Leave9.669
SRR9715741Leave11.110
SRR9715739Root12.559
SRR9715742Root24.619
SRR9715743Root21.811

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.576
SRR8749028MeJA induced 9h18.640
SRR8749029MeJA induced 9h15.350
SRR8749030Uninduced13.204
SRR8749031Uninduced5.109
SRR8749032Uninduced4.483

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.645
SRR8400027Control-Root26.829

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved