Gene detail

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Gene detail information of Glyur000538s00027557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16740.1	2.00E-92	terpene synthase 03
NR	XP_003551095.1	0	PREDICTED: alpha-farnesene synthase-like [Glycine max]
Swissprot	tr\|B9RXW0\|TPS7_RICCO	0	Alpha-farnesene synthase
trEMBL	tr\|I1MS82\|I1MS82_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G05500.1}

Sequence

Transcript Sequence

>Glyur000538s00027557.1
CAAATGTTCTGTATGTTTGGCCTATATAAAGGGTGTGTGAGCTTTGGCTAACTCATCTATCAATCAGAAAGAAGAGAAACAATGGCGAGCAACGTGAATAATCAATCAGACGTGAAGCTAACCCATCTGTCGCCTCATCAAAATGTTACAGAGATTTTACGAAGATCTGCAAATTACAAACCCAACATTTGGAAACATGACTTTCTTCAGTCCCTTGGCAGTTTATATGATAAAGAAGATCAATTTCGTATGCAACTAAACAAGCAGGTGATTGAAGTAAAGGGTCTTTTTGTTCAAGAGTTGGGTGTTTTGCAAAAACTAGAGTTGGTTGACTGGATTCAAAAACTAGGCCTTGCCAACCATTTTCAGGAGGAAATCAATGAGTTTCTCGAAACTATATTTGTCTCTGTCAAAAACCGTAACAATATTGCTAGCGTGCTAGAGAATTTGCATGAATCTGCACTATGCTTCAAGCTTCTAAGACAACATGGATATGAAGTTTTGCCAGATATTCTAGGAGAATTCTTTGATGAAAAAGGTCTAGTGATGAGGGAAAGCTCATTTGCTGGTGATATTGAAGATAATATGGAGCTTCTTGAGGCCTCCCATTTGGTCATAGAAGGAGAAAATATCTTGGAACAGGTCAAAAAGTTTACAATAAATTGGCTCAAGGATACTCTAACTTCAAGTTCCATCAACATCGACGAACAATCTAATCTAGTTGTTCAAAGAGTTNTCCATGCCTTGGAGCTCCCATCCCACTGGAGAGTGCCATGGTTTGATGTCAAATGGCATGTTAGGCAATACCAAACTGAGAAACATATGAACCCCATTTTATTTGAATTGGCCAAATTAAACTTCAACATAATTCAGGCNAAACTTCAAAAGGAGGTCAAGGAATTATCCAGGTTGGTTGAAAGTTTCATGTGTGCAGCAGGAGTTGCTTTTGAGCCTAAGTATCAATNTTTTCGGAAATGGCTTACTAAAGTGATTATCTTCGTATTAGTGATTGATGATGTTTATGATATACACGCCACATTTGAAGAATTGGAGCCGTTCACAATGGCATTTGATAGATGGGACGCCAAAGAAGTTGAAGAACTTCCAAGGTATATGAGGATTTGTTTCCATGCACTTCAAGATGTCACAAATGAAATGGCTTATGAAATTGCGGGAGAAAAAAACTTTAATCTGTGGACAGACTTTTGCAAGGCATTATACGTGGAAGCAAAGTGGTATCGAATGGGATACATTCCATCATTGCAAGAATATTTAAGCAATGCTTGGATTTCATCTTCGGGGCCAATAATTATACTCTNTTCATATTTTGCAACAATGTATGAAGTAAATGATGAGATAGACGATTTTCTACACACATATGAAGATTTGGTATACAATATATCTCTTGTAATTAGACTGTGCAATGATTTAGGGACCACTGTGGCCGAAAGAGAAAGGGGTGATGCTGCTTCATCTATCCTATGCTATATGAACCAAATGGATGTTTCAGAGGAAGATGCAAGAAAACATGTACAAGACATCATAAACAGTGCATGGAAAAAGATAAATGGNCACTGTTCCACTCGTGTTGCTTCGTTGGAACCATTTCTTAATCAAGCCAGAAATGTAGCTCGAGTGGCCCATACCCTTTATCAAAATGGCGATGGGTTTGGAATTCAAGATCGAGATATCAAAAAACACATCTTATCACTAGTTGTTGAACCCTTATAGATGTTGAAGATATATGAAATACAATTTCCCTTCCGTGCATGTGAAATTGTAAGCCAAAGTACATGTGCAATAAAAGACTAGACTATTGTCACATTCACCCAAAACTATACCATCCATGTTCAACCACTTTTTTATGTCTTAAAAACTGTTTTTACATTAACATCATTAAACAATTTTTTTCTTTTTTTCTTTCTTAAAAATAGTTCCTAAGTATAGTTTTGTATAAAAGACAAAAAAACGAAAACAAAAAACCAATTTCTCAATTATAACTACGAAAGGGGCAAAATGACAGAGAAAATATGATCAGGGGAAAAGGGTCGGTTAAGGTAGTAAAGAATTTGCACAAAAAGACTACAGAGAAGCAAGCAAATCAATCTACTTGTGACCTAGAGACAGAGTAACTTGGCTGCACTGACTAAGTAACTATCATGAAGATCTGTTAGTTGCTGGTAAACTACTTTACAAAATGTACAAACTCGCTTAAAAAAGGCAAGACAATATGACAAAGATAGCAAGTCAATGATCAGGCTTAGCTCTAGCCCTCAATATTCCAGGGAGTGGTGGCGATGCTGAGGAGGAAGGCATATCGGGTAGGTTTGAAACTGCATTAGGAACCTGTGCATCATCTTCATCCAAGCCCNACGTGCCAGAACCATCACCTCCATCTGTAAGATTGTGTGTTATGTTATCATTCTGAGGTGTCTCACGAGATTCCATTGCCTTGAGAACATAGTTGTCATCGTGCAGCTGAAAAGAAGTGCTGCAGAGAAGAGAGCCATAAATCGAAAGAGATTTTGAATAATCAATGCTGTAATAGAGAAGATGCTACGGAAGGGGCAGANACATTATTAAGTGCATGTTTGGTTTTCAATTAGAAGATTGTAAAAGTATGTTTGAACCCAAAATAATTATACATTTGCAAGTAAAAACCAAACATGCACTAAATCTTCATATTAAAGACATCATATGGACTAGTAATTGATGCCTTCTTACTTGTTGAAATCAAAATGCACAAGCCGCGTATCTTCTGATGTTTCCACATCCACAGTTGCATGAGGACTTGTCTACAGTTTCCAAAAGCCAGAGATGAGACTAAATTAAAGATAATACCATTAAGAGCCACATCACAGCANTTTGAAATTTGATGCTTTNCATTTTGTTATATATTTNTTTCCTTTTCTTTGTTTCTATCTTTAGGGTGGGCAATTTCTTTCTCAAAATTAACAAGTTTACCATCTTAGAACTGTCACCATGAATCCTCCATAGAGATCCATAACATAGCCTTGAGCAGACATGGTAGTGCCCAAGATAAACTGAGTGAAGTGAACTCGACAGTGTAAACAACCATAGCTACTACATTCATTTTCTGTTGACAAATTCCAATGAATGCAGTAGCTATGGTTGTTTACACTAAATAAATGCTGAATACTGAATAGAGAGTTCGGCTTGAGACCATTACAGTATATATAAATAAATTATCGTACAAATTGAAGGTCCAAGGAAAAACTGAGCAACAAATTCTGGTGGACAAACTCAGAAAGGCAAAAACAGGATCAAAGGCAATGATAGTGTACCTGCACCAGGATAAAAGGCAATGATACACTTCCACCAGGAGCATTTCCCGATGGATATAATTGCTCATTTCGTTGTATAAGGTTCTGGAGACCTGCGCTCTTGATAAAATAATACAAATATTTAGCAAACAGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00538	103198	109586	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14173	AFS1	EC:4.2.3.46	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0000287 magnesium ion binding GO:0010333 terpene synthase activity GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000538s00027557.1	PF01397.16	Terpene_synth	37	222	3.10E-38
Glyur000538s00027557.1	PF03936.11	Terpene_synth_C	252	496	3.90E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.094
DRR006520	Root Summer glycyrrhizin high producing strain	0.093
DRR006521	Root Winter glycyrrhizin high producing strain	0.032
DRR006522	Root Winter glycyrrhizin high producing strain	0.031
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	172.701
DRR006526	Leaf Summer glycyrrhizin high producing strain	172.384

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	52.668
SRR9715740	Leave	114.930
SRR9715741	Leave	18.524
SRR9715739	Root	0.065
SRR9715742	Root	0.116
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.017
SRR8749030	Uninduced	0.017
SRR8749031	Uninduced	0.226
SRR8749032	Uninduced	0.113

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.015
SRR8400027	Control-Root	0.010