Gene detail information of Glyur000538s00027564.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43210.11.00E-44Excinuclease ABC, C subunit, N-terminal
NRXP_004516472.11.09E-93PREDICTED: structure-specific endonuclease subunit slx1-like [Cicer arietinum]
COGYP_391372.11.00E-09excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2]
trEMBLtr|I1L5J7|I1L5J7_SOYBN6.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G36020.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00538143338145523+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15078SLX1 EC:3.6.1.- Fanconi anemia pathway map03460


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000538s00027564.1PF01541.19GIY-YIG411151.10E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.888
SRR1783600control10.853
SRR1783602moderate drought stress18.207
SRR1811619moderate drought stress17.865

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.093
DRR006520Root Summer glycyrrhizin high producing strain9.414
DRR006521Root Winter glycyrrhizin high producing strain7.330
DRR006522Root Winter glycyrrhizin high producing strain6.966
DRR006523Root Summer glycyrrhizin low producing strain7.233
DRR006524Root Summer glycyrrhizin low producing strain7.031
DRR006525Leaf Summer glycyrrhizin high producing strain7.582
DRR006526Leaf Summer glycyrrhizin high producing strain7.566

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.761
SRR2868004Drought Stress(Tissue:root)11.636
SRR2967015Control (Tissue:root)10.816

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.724
SRR9715740Leave12.187
SRR9715741Leave9.696
SRR9715739Root3.143
SRR9715742Root2.633
SRR9715743Root4.215

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.906
SRR8749028MeJA induced 9h7.559
SRR8749029MeJA induced 9h3.978
SRR8749030Uninduced5.952
SRR8749031Uninduced9.542
SRR8749032Uninduced8.937

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.995
SRR8400027Control-Root6.678

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved