Gene detail information of Glyur000539s00030587.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47010.1 | 9.00E-07 | RNA helicase, putative |
| NR | KDO41066.1 | 5.67E-06 | hypothetical protein CISIN_1g0010543mg, partial [Citrus sinensis] |
| Swissprot | tr|Q9FJR0|RENT1_ARATH | 3.00E-07 | Regulator of nonsense transcripts 1 homolog |
| trEMBL | tr|A0A067DPW7|A0A067DPW7_CITSI | 2.00E-06 | Uncharacterized protein {ECO:0000313|EMBL:KDO41067.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00539 | 11071 | 13793 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14326 | UPF1, RENT1 | EC:3.6.4.- | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.388 |
| SRR1783600 | control | 2.936 |
| SRR1783602 | moderate drought stress | 1.891 |
| SRR1811619 | moderate drought stress | 1.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.481 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.357 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.677 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.702 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.567 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.407 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.383 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.977 |
| SRR2967015 | Control (Tissue:root) | 5.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.143 |
| SRR8400027 | Control-Root | 1.122 |