Gene detail information of Glyur000541s00027315.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15800.1 | 1.00E-126 | Glycosyl hydrolase superfamily protein |
| NR | XP_006597117.1 | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase 14-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8L868|E1311_ARATH | 4.00E-97 | Glucan endo-1,3-beta-glucosidase 11 (Precursor) |
| trEMBL | tr|I1MCF3|I1MCF3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G01030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00541 | 6207 | 9657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000541s00027315.1 | PF00332.13 | Glyco_hydro_17 | 211 | 381 | 2.20E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.913 |
| SRR1783600 | control | 0.891 |
| SRR1783602 | moderate drought stress | 0.847 |
| SRR1811619 | moderate drought stress | 0.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.427 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.542 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.575 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.790 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.803 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.335 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.130 |
| SRR2967015 | Control (Tissue:root) | 6.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.127 |
| SRR9715740 | Leave | 0.087 |
| SRR9715741 | Leave | 0.503 |
| SRR9715739 | Root | 0.678 |
| SRR9715742 | Root | 3.167 |
| SRR9715743 | Root | 2.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.482 |
| SRR8400027 | Control-Root | 2.302 |