Gene detail information of Glyur000542s00017566.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18450.1 | 4.00E-32 | Integrase-type DNA-binding superfamily protein |
| NR | XP_011084760.1 | 2.61E-46 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like [Sesamum indicum] |
| Swissprot | tr|Q9LQZ2|DRE2D_ARATH | 1.00E-41 | Dehydration-responsive element-binding protein 2D |
| trEMBL | tr|G7I659|G7I659_MEDTR | 3.00E-45 | AP2 domain class transcription factor {ECO:0000313|EMBL:AES61166.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00542 | 129745 | 130278 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000542s00017566.1 | PF00847.15 | AP2 | 34 | 83 | 4.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.235 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.229 |
| SRR2967015 | Control (Tissue:root) | 0.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.004 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.728 |
| SRR8749028 | MeJA induced 9h | 0.104 |
| SRR8749029 | MeJA induced 9h | 0.081 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.054 |
| SRR8400027 | Control-Root | 0.046 |